Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30032
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10530| Best HMM Match : UBA (HMM E-Value=0.0016)                    45   7e-05
SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_41439| Best HMM Match : SWIM (HMM E-Value=0.088)                    28   9.1  
SB_17682| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_10530| Best HMM Match : UBA (HMM E-Value=0.0016)
          Length = 74

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 21/28 (75%), Positives = 24/28 (85%)
 Frame = +1

Query: 1  VMSQANVSRAKAVRALKNNQSDIVNAIM 84
          VM QANVSR KA+ ALK N++DIVNAIM
Sbjct: 14 VMQQANVSRNKAIMALKKNENDIVNAIM 41


>SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 92  QCRRSLRHNILCHCC*F*VTLNISNWTKS 178
           QC+  L+    CHCC   V +  S+WT S
Sbjct: 444 QCKLMLKRQ--CHCCLMAVYIRCSDWTSS 470


>SB_41439| Best HMM Match : SWIM (HMM E-Value=0.088)
          Length = 921

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 644 PTKKRKIGHSPIKTITSTTRG 582
           PT+KRK GH   K + S T+G
Sbjct: 880 PTRKRKRGHDLAKVVQSNTQG 900


>SB_17682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 604

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 178 SNEHMHNRRYIELYTRNKKNYHK 246
           +  H H+R Y+ L + N K YHK
Sbjct: 441 AQSHTHSRAYMRLLSANVKYYHK 463


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,087,387
Number of Sequences: 59808
Number of extensions: 384708
Number of successful extensions: 827
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)