Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30032
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49470.1 68416.m05407 nascent polypeptide-associated complex ...    46   2e-05
At1g33040.1 68414.m04068 nascent polypeptide-associated complex ...    46   3e-05
At4g10480.1 68417.m01720 nascent polypeptide associated complex ...    45   5e-05
At3g12390.1 68416.m01544 nascent polypeptide associated complex ...    41   7e-04
At3g07980.1 68416.m00975 protein kinase, putative similar to MAP...    28   7.5  

>At3g49470.1 68416.m05407 nascent polypeptide-associated complex
           (NAC) domain-containing protein similar to alpha-NAC,
           non-muscle form [Mus musculus] GI:1666690; contains Pfam
           profile PF01849: NAC domain
          Length = 217

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 22/31 (70%), Positives = 28/31 (90%)
 Frame = +1

Query: 1   VMSQANVSRAKAVRALKNNQSDIVNAIMELT 93
           VM+QA VSR+KAV+ALK++  DIV+AIMELT
Sbjct: 186 VMTQAGVSRSKAVKALKSHDGDIVSAIMELT 216


>At1g33040.1 68414.m04068 nascent polypeptide-associated complex
           (NAC) domain-containing protein similar to alpha-NAC,
           non-muscle form [Mus musculus] GI:1666690; contains Pfam
           profile PF01849: NAC domain
          Length = 209

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 23/31 (74%), Positives = 26/31 (83%)
 Frame = +1

Query: 1   VMSQANVSRAKAVRALKNNQSDIVNAIMELT 93
           VM+QA VS+AKAV ALK N  DIV+AIMELT
Sbjct: 178 VMTQAGVSKAKAVSALKANDGDIVSAIMELT 208


>At4g10480.1 68417.m01720 nascent polypeptide associated complex
           alpha chain protein, putative / alpha-NAC, putative
           similar to alpha-NAC, non-muscle form [Mus musculus]
           GI:1666690; contains Pfam profiles PF01849: NAC domain,
           PF00627: UBA/TS-N domain
          Length = 212

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 22/31 (70%), Positives = 26/31 (83%)
 Frame = +1

Query: 1   VMSQANVSRAKAVRALKNNQSDIVNAIMELT 93
           VM+QA VSR KAV+ALK +  DIV+AIMELT
Sbjct: 181 VMTQAGVSRPKAVKALKESNGDIVSAIMELT 211


>At3g12390.1 68416.m01544 nascent polypeptide associated complex
           alpha chain protein, putative / alpha-NAC, putative
           similar to alpha-NAC, non-muscle form [Mus musculus]
           GI:1666690; contains Pfam profiles PF01849: NAC domain,
           PF00627: UBA/TS-N domain
          Length = 203

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 21/31 (67%), Positives = 24/31 (77%)
 Frame = +1

Query: 1   VMSQANVSRAKAVRALKNNQSDIVNAIMELT 93
           VM+QA VSR  AV+ALK    DIV+AIMELT
Sbjct: 172 VMTQAGVSRPNAVKALKAADGDIVSAIMELT 202


>At3g07980.1 68416.m00975 protein kinase, putative similar to MAP3K
            epsilon protein kinase [Arabidopsis thaliana]
            gi|3549652|emb|CAA12272
          Length = 1367

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 741  LLLFLQNCTISIASFLYMILSFQLLYAVRQFIAYKEAKNRPFTYKNHH 598
            +LL +  CT  +++    + + Q   A++Q I   E K  P  Y+ HH
Sbjct: 1088 ILLKILECTNHLSTDPNCLENLQRADAIKQLIPNLELKEGPLVYQIHH 1135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,035,562
Number of Sequences: 28952
Number of extensions: 264523
Number of successful extensions: 537
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)