Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30031
         (383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    83   2e-17
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    27   1.3  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    26   2.3  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   3.1  
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    25   3.1  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    25   5.4  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    25   5.4  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   5.4  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    25   5.4  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    25   5.4  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   5.4  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    24   7.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    24   7.1  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    24   9.4  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 82.6 bits (195), Expect = 2e-17
 Identities = 39/83 (46%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
 Frame = +2

Query: 23  MVNVPKQRRTYXXXXXXXXXXXX--TQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 196
           MVN+PK R+TY              TQYKK  +   AQG+RRYDRKQ G+GGQ+KP+F  
Sbjct: 1   MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHK 60

Query: 197 XXXXXXXIVLRLECADCKVNHRL 265
                  +VLRLEC  CK  ++L
Sbjct: 61  KAKVTKKVVLRLECVSCKYKNQL 83



 Score = 46.8 bits (106), Expect = 1e-06
 Identities = 19/27 (70%), Positives = 23/27 (85%)
 Frame = +1

Query: 253 ESQVALKRCKHFELGGDKKRKGQMIQF 333
           ++Q+ LKRCKHFELGG+KK KG  IQF
Sbjct: 80  KNQLVLKRCKHFELGGEKKTKGAAIQF 106


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 112 LGLFVLCYLVYFVAFTFFAVRPALFWYVHHF 20
           L L +   LVY + + +F   P LF  V+HF
Sbjct: 321 LSLTIYIGLVYSILYLWFEAFPILFTTVYHF 351


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 112 LGLFVLCYLVYFVAFTFFAVRPALFWYVHHF 20
           L L +   L+Y + + +F   P LF  V+HF
Sbjct: 321 LSLNIYIGLIYSILYLWFEAFPILFTSVYHF 351


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 16/63 (25%), Positives = 22/63 (34%)
 Frame = -1

Query: 245  NQHTQDGAQFS*WFLPSF*RWVWTDHRNPAVYDHNVFYPGQRAFPWTFCTVLPCVLCGIY 66
            NQ   D      W L     W WT   + ++Y +  +    R F          VLCG  
Sbjct: 1212 NQSNWDVFSIGLWALSCLTFWFWTGVYSQSLYTYEFYKSASRIFR---TPNFWAVLCGTI 1268

Query: 65   IFC 57
            + C
Sbjct: 1269 VSC 1271


>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = -3

Query: 213 LVVFAFFLKMGLD*PP*PCCLRS*RLLPWAACLSLDFLYCVTLCTLWHLHFLQYVLRCFG 34
           L+VF FF+  G         LR  R+L      S+ F +   L TL+H   + + + C G
Sbjct: 40  LLVFGFFMIAGFS-KSVSFFLRKDRMLG-----SISF-FSGLLLTLFHFPIIGFFVECLG 92

Query: 33  TFTIFE 16
            F +F+
Sbjct: 93  FFNLFK 98


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 129 WAACLSLDFLYCVTLCTLWHLHFLQYVLRCFGTFTIF 19
           W+  ++L F  C+  C LW + F +   R    FT F
Sbjct: 197 WSNAIALGF--CIIACILWRMIFFKVPARAL-IFTQF 230


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 129 WAACLSLDFLYCVTLCTLWHLHFLQYVLRCFGTFTIF 19
           W+  ++L F  C+  C LW + F +   R    FT F
Sbjct: 197 WSNAIALGF--CIIACILWRMIFFKVPARAL-IFTQF 230


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 96  STKSPRKGTLPRVEDVMIVNSRVTVVSPN 182
           ST+ PR  T    E V +++ R+ V++PN
Sbjct: 191 STEQPRMHTFSLSELVPLLSERLYVINPN 219


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 129 WAACLSLDFLYCVTLCTLWHLHFLQYVLRCFGTFTIF 19
           W+  ++L F  C+  C LW + F +   R    FT F
Sbjct: 197 WSNAIALGF--CIIACILWRMIFFKVPARAL-IFTQF 230


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 129 WAACLSLDFLYCVTLCTLWHLHFLQYVLRCFGTFTIF 19
           W+  ++L F  C+  C LW + F +   R    FT F
Sbjct: 197 WSNAIALGF--CIIACILWRMIFFKVPARAL-IFTQF 230


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 132 PWAACLSLDFLYCVTLCTLWHL 67
           P A  + L +LY  TL + WHL
Sbjct: 679 PLAVAILLHYLYTDTLLSPWHL 700


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 168 VVSPNPSSKRRQKPLRKLCSVLS 236
           V SPNP S +R+K  R+  S+ S
Sbjct: 276 VSSPNPPSAKREKKKRRKSSMSS 298


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 108 PRKGTLPRVEDVMIVNSRVTVVSPNPSS 191
           P+K + P+V  +M      +VV+P+P+S
Sbjct: 620 PQKPSAPQVTRLMAPQDSSSVVTPSPTS 647


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 105 SPRKGTLPRVEDVMIVNSRVTVVSPNP 185
           SP +G+LPR     ++ + +++   NP
Sbjct: 735 SPSRGSLPRRPSSALLTNPISITKSNP 761


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,520,215
Number of Sequences: 5004
Number of extensions: 28743
Number of successful extensions: 96
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)