Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30031
(383 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14320.1 68417.m02206 60S ribosomal protein L36a/L44 (RPL36aB) 83 8e-17
At3g23390.1 68416.m02949 60S ribosomal protein L36a/L44 (RPL36aA... 83 8e-17
At2g32390.1 68415.m03958 glutamate receptor family protein (GLR3... 30 0.61
At4g11680.1 68417.m01866 zinc finger (C3HC4-type RING finger) fa... 27 5.7
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ... 27 5.7
At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containi... 27 5.7
At5g60690.1 68418.m07616 homeodomain-leucine zipper protein Revo... 26 7.5
At5g18530.1 68418.m02191 beige/BEACH domain-containing protein c... 26 7.5
At3g17020.1 68416.m02173 universal stress protein (USP) family p... 26 7.5
At2g13620.1 68415.m01501 cation/hydrogen exchanger, putative (CH... 26 7.5
At1g05200.1 68414.m00524 glutamate receptor family protein (GLR3... 26 7.5
At4g35270.1 68417.m05012 RWP-RK domain-containing protein simila... 26 9.9
At1g59790.1 68414.m06732 cullin-related low similarity to Hs-CUL... 26 9.9
At1g08150.1 68414.m00898 sodium/hydrogen exchanger family protei... 26 9.9
>At4g14320.1 68417.m02206 60S ribosomal protein L36a/L44 (RPL36aB)
Length = 105
Score = 82.6 bits (195), Expect = 8e-17
Identities = 40/78 (51%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Frame = +2
Query: 23 MVNVPKQRRTYXXXXXXXXXXXX--TQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 196
MVN+PK + TY TQYKK K+ AAQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 1 MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 197 XXXXXXXIVLRLECADCK 250
IVLRL+C CK
Sbjct: 61 KAKTTKKIVLRLQCQSCK 78
Score = 39.9 bits (89), Expect = 6e-04
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 256 SQVALKRCKHFELGGDKKRKG 318
SQ +KRCKHFE+GGDKK KG
Sbjct: 81 SQRPIKRCKHFEIGGDKKGKG 101
>At3g23390.1 68416.m02949 60S ribosomal protein L36a/L44 (RPL36aA)
similar to ribosomal protein L41 GB:AAA34366 from
[Candida maltosa]
Length = 105
Score = 82.6 bits (195), Expect = 8e-17
Identities = 40/78 (51%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Frame = +2
Query: 23 MVNVPKQRRTYXXXXXXXXXXXX--TQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 196
MVN+PK + TY TQYKK K+ AAQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 1 MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 197 XXXXXXXIVLRLECADCK 250
IVLRL+C CK
Sbjct: 61 KAKTTKKIVLRLQCQSCK 78
Score = 39.9 bits (89), Expect = 6e-04
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 256 SQVALKRCKHFELGGDKKRKG 318
SQ +KRCKHFE+GGDKK KG
Sbjct: 81 SQRPIKRCKHFEIGGDKKGKG 101
>At2g32390.1 68415.m03958 glutamate receptor family protein (GLR3.5)
plant glutamate receptor family, PMID:11379626
Length = 895
Score = 29.9 bits (64), Expect = 0.61
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2
Query: 115 FLGLFVLCYLVYFVAFTFFAVRPALFW 35
F GLF++C +V+F+A T F + +FW
Sbjct: 793 FWGLFLICGVVWFIALTLFCWK--VFW 817
>At4g11680.1 68417.m01866 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q9WTV7 RING finger
protein 12 (LIM domain interacting RING finger protein)
{Mus musculus}; contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 390
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -1
Query: 164 NPAVYDHNVFYPGQRAFPWTFCTVLPCVLCGIYIFCSTSCAVLV 33
+P +Y + + G F FC L CV+ G+ + C C + +
Sbjct: 236 SPQLYWLCIIFLGFDVFFVVFCVALACVI-GLAVCCCLPCIIAI 278
>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
family protein low similarity to Translation initiation
factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
aphidicola} SP|P46243, {Salmonella typhimurium}
SP|P33321; contains Pfam profiles PF05198: Translation
initiation factor IF-3 N-terminal domain, PF00707:
Translation initiation factor IF-3 C-terminal domain
Length = 520
Score = 26.6 bits (56), Expect = 5.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 108 PRKGTLPRVEDVMIVNSRVTVVSPNPSSKR 197
P+KG + ++D+ I ++RV SP P S +
Sbjct: 255 PKKGGVKLMKDIDIKSARVKEESPKPDSSK 284
>At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 798
Score = 26.6 bits (56), Expect = 5.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 92 LPCVLCGIYIFCSTSCAV 39
+PC C I ++CS SC +
Sbjct: 275 VPCPSCSIPVYCSESCQI 292
>At5g60690.1 68418.m07616 homeodomain-leucine zipper protein
Revoluta (REV) / fascicular fiberless 1 (IFL1) identical
to HD-zip transcription factor Revoluta (GI:9759333)
{Arabidopsis thaliana}; contains Pfam profiles PF01852:
START domain and PF00046: Homeobox domain
Length = 842
Score = 26.2 bits (55), Expect = 7.5
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 159 RVTVVSPNPSSKRRQKPLRKLCSVLS 236
RV P PSS RRQ+ +R+ CS+L+
Sbjct: 39 RVYAECPKPSSLRRQQLIRE-CSILA 63
>At5g18530.1 68418.m02191 beige/BEACH domain-containing protein
contains 5 WD-40 repeats (PF00400); contains
Beige/BEACH domain (Pfam PF02138); FACTOR ASSOCIATED
WITH N-SMASE ACTIVATION (FAN) (SP:Q92636) Homo
sapiens;similar to Lipopolysaccharide-responsive and
beige-like anchor protein (CDC4-like protein)
(Beige-like protein) (SP:P50851) [Homo sapiens}
Length = 909
Score = 26.2 bits (55), Expect = 7.5
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = -1
Query: 158 AVYDHNVFYPG--QRAFPWTFCTVLPCVLCGIYIFCS--TSCAVLVRSPFLSS 12
+VY+ N YP QR + WT +P C IFCS S + L P+ SS
Sbjct: 459 SVYEPNE-YPSDMQRLYDWTPDECIPEFYCDPRIFCSLHPSMSDLAVPPWASS 510
>At3g17020.1 68416.m02173 universal stress protein (USP) family
protein similar to early nodulin ENOD18 [Vicia faba]
GI:11602747; contains Pfam profile PF00582: universal
stress protein family
Length = 163
Score = 26.2 bits (55), Expect = 7.5
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -2
Query: 334 KIGSSVPFSSCHHQAQSACISS-MQPVIHLAISTLKTEHNFLSGFCLLFE 188
+IG +V FS C +A S I + ++ HL + T+ + N+ G L+E
Sbjct: 8 RIGVAVDFSDCSKKALSWAIDNVVRDGDHLILITIAHDMNYEEGEMQLWE 57
>At2g13620.1 68415.m01501 cation/hydrogen exchanger, putative
(CHX15) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 821
Score = 26.2 bits (55), Expect = 7.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 115 FLGLFVLCYLVYFVAFTFFAVRPALFWYV 29
F L+V+ F+A F VRP + W +
Sbjct: 228 FASLWVMISSAVFIAVCVFVVRPGIAWII 256
>At1g05200.1 68414.m00524 glutamate receptor family protein (GLR3.4)
plant glutamate receptor family, PMID:11379626
Length = 959
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 115 FLGLFVLCYLVYFVAFTFFAVRPALFW 35
F GLF++C + F+A T F R +FW
Sbjct: 858 FWGLFLICGITCFMALTVFFWR--VFW 882
>At4g35270.1 68417.m05012 RWP-RK domain-containing protein similar
to nodule inception protein GI:6448579 from (Lotus
japonicus); contains Pfam profile: PF02042 RWP-RK domain
Length = 974
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = -1
Query: 302 SPPSSKCLHLFNAT--CDSPCNQHTQDG 225
SPPSS C H ++ C + NQ T G
Sbjct: 774 SPPSSSCSHSSGSSTCCSTGANQSTNTG 801
>At1g59790.1 68414.m06732 cullin-related low similarity to Hs-CUL-1
[Homo sapiens] GI:1381142
Length = 374
Score = 25.8 bits (54), Expect = 9.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 72 HLHFLQYVLRCFGTFTIFEFVR 7
H F+ YV+ CF T+F VR
Sbjct: 338 HNKFIVYVIECFQNHTLFHKVR 359
>At1g08150.1 68414.m00898 sodium/hydrogen exchanger family protein
contains InterPro entry IPR006153: Sodium/hydrogen
exchanger
Length = 815
Score = 25.8 bits (54), Expect = 9.9
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -2
Query: 88 LVYFVAFTFFAVRPALFWYV 29
++ +V F + VRPA+FW +
Sbjct: 266 IIGYVIFMVWVVRPAMFWVI 285
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,111,285
Number of Sequences: 28952
Number of extensions: 155315
Number of successful extensions: 462
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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