Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30030
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0572 - 4044610-4044658,4044754-4044857,4044942-4044944           83   3e-16
02_05_1078 + 33946902-33946904,33947006-33947109,33947206-33947254     83   3e-16
02_05_1076 + 33932543-33932545,33932643-33932746,33932859-33932907     83   3e-16
06_03_0803 + 24737115-24737366,24738921-24739004,24739152-247392...    28   5.9  

>06_01_0572 - 4044610-4044658,4044754-4044857,4044942-4044944
          Length = 51

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 34/40 (85%), Positives = 38/40 (95%)
 Frame = -2

Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 78
           K+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 10  KKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49


>02_05_1078 + 33946902-33946904,33947006-33947109,33947206-33947254
          Length = 51

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 34/40 (85%), Positives = 38/40 (95%)
 Frame = -2

Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 78
           K+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 10  KKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49


>02_05_1076 + 33932543-33932545,33932643-33932746,33932859-33932907
          Length = 51

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 34/40 (85%), Positives = 38/40 (95%)
 Frame = -2

Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 78
           K+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 10  KKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49


>06_03_0803 +
           24737115-24737366,24738921-24739004,24739152-24739255,
           24739321-24739445,24739549-24739707,24740120-24740237,
           24740317-24740851,24740948-24741042,24741153-24741431,
           24741478-24741592,24741669-24741855,24741934-24742490
          Length = 869

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 380 GFSI*VTPKHHTFQCQYN*YNALATSQINFQTDMPTTAHSFSS 252
           G ++ VTPK   F+     Y A  T  +NF  D+P   H F S
Sbjct: 807 GINVTVTPKVLVFEN----YGAKKTFTVNFHVDVPQRDHVFGS 845


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,774,535
Number of Sequences: 37544
Number of extensions: 235137
Number of successful extensions: 460
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)