Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30030
         (675 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U57846-1|AAB02265.1|   51|Homo sapiens ribosomal protein L39 pro...    81   3e-15
D79205-1|BAA11465.1|   51|Homo sapiens ribosomal protein L39 pro...    81   3e-15
BC070205-1|AAH70205.1|   51|Homo sapiens ribosomal protein L39 p...    81   3e-15
BC001019-1|AAH01019.1|   51|Homo sapiens ribosomal protein L39 p...    81   3e-15
AB061835-1|BAB79473.1|   51|Homo sapiens ribosomal protein L39 p...    81   3e-15
AB209077-1|BAD92314.1|   70|Homo sapiens ribosomal protein L39 v...    79   2e-14
L05096-1|AAC15859.1|   51|Homo sapiens ribosomal protein L39 pro...    75   2e-13
BC012328-1|AAH12328.1|   51|Homo sapiens ribosomal protein L39-l...    75   2e-13
AF548529-1|AAN52397.1|   51|Homo sapiens ribosomal protein L39-2...    75   2e-13
AB063610-1|BAC19837.1|   51|Homo sapiens ribosomal protein L39-l...    75   2e-13
AB063607-1|BAC19834.1|   29|Homo sapiens ribosomal protein L39-l...    39   0.014
AB065849-1|BAC06067.1|  314|Homo sapiens seven transmembrane hel...    31   3.7  

>U57846-1|AAB02265.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 81.4 bits (192), Expect = 3e-15
 Identities = 35/42 (83%), Positives = 38/42 (90%)
 Frame = -2

Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 72
           KR LAKK KQNRPIPQW+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 10  KRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51


>D79205-1|BAA11465.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 81.4 bits (192), Expect = 3e-15
 Identities = 35/42 (83%), Positives = 38/42 (90%)
 Frame = -2

Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 72
           KR LAKK KQNRPIPQW+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 10  KRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51


>BC070205-1|AAH70205.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 81.4 bits (192), Expect = 3e-15
 Identities = 35/42 (83%), Positives = 38/42 (90%)
 Frame = -2

Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 72
           KR LAKK KQNRPIPQW+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 10  KRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51


>BC001019-1|AAH01019.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 81.4 bits (192), Expect = 3e-15
 Identities = 35/42 (83%), Positives = 38/42 (90%)
 Frame = -2

Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 72
           KR LAKK KQNRPIPQW+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 10  KRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51


>AB061835-1|BAB79473.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 81.4 bits (192), Expect = 3e-15
 Identities = 35/42 (83%), Positives = 38/42 (90%)
 Frame = -2

Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 72
           KR LAKK KQNRPIPQW+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 10  KRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51


>AB209077-1|BAD92314.1|   70|Homo sapiens ribosomal protein L39
           variant protein.
          Length = 70

 Score = 78.6 bits (185), Expect = 2e-14
 Identities = 33/42 (78%), Positives = 38/42 (90%)
 Frame = -2

Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 72
           K+ LAKK KQNRPIPQW+RM+TGN IRYN+KRRHW+RTKL L
Sbjct: 29  KQFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWKRTKLGL 70


>L05096-1|AAC15859.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 75.4 bits (177), Expect = 2e-13
 Identities = 32/42 (76%), Positives = 37/42 (88%)
 Frame = -2

Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 72
           KR LAKK KQNRPIPQW++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 10  KRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51


>BC012328-1|AAH12328.1|   51|Homo sapiens ribosomal protein L39-like
           protein.
          Length = 51

 Score = 75.4 bits (177), Expect = 2e-13
 Identities = 32/42 (76%), Positives = 37/42 (88%)
 Frame = -2

Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 72
           KR LAKK KQNRPIPQW++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 10  KRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51


>AF548529-1|AAN52397.1|   51|Homo sapiens ribosomal protein L39-2
           protein.
          Length = 51

 Score = 75.4 bits (177), Expect = 2e-13
 Identities = 32/42 (76%), Positives = 37/42 (88%)
 Frame = -2

Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 72
           KR LAKK KQNRPIPQW++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 10  KRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51


>AB063610-1|BAC19837.1|   51|Homo sapiens ribosomal protein L39-like
           protein.
          Length = 51

 Score = 75.4 bits (177), Expect = 2e-13
 Identities = 32/42 (76%), Positives = 37/42 (88%)
 Frame = -2

Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 72
           KR LAKK KQNRPIPQW++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 10  KRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51


>AB063607-1|BAC19834.1|   29|Homo sapiens ribosomal protein L39-like
           protein.
          Length = 29

 Score = 39.1 bits (87), Expect = 0.014
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = -2

Query: 197 KRKLAKKLKQNRPIPQWVRM 138
           KR LAKK KQNRPIPQW++M
Sbjct: 10  KRFLAKKQKQNRPIPQWIQM 29


>AB065849-1|BAC06067.1|  314|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 314

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 502 VISYIFFLLIFTFRHVFSGFNFKLLTCIKHV*KSLSY*LTIVLV 633
           +ISY+F L+    RH   G+   L TC  H+     + +T++++
Sbjct: 213 LISYLFILITILKRHTGKGYQKPLSTCGSHLIAIFLFYITVIIM 256


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,039,070
Number of Sequences: 237096
Number of extensions: 1398803
Number of successful extensions: 5803
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5803
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)