Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30030
         (675 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071712-1|AAL49334.1|   51|Drosophila melanogaster RH27094p pro...    89   7e-18
AE013599-3798|AAF47154.1|   51|Drosophila melanogaster CG3997-PA...    89   7e-18
AF012422-1|AAB65802.1|   51|Drosophila melanogaster ribosomal pr...    86   4e-17

>AY071712-1|AAL49334.1|   51|Drosophila melanogaster RH27094p
           protein.
          Length = 51

 Score = 88.6 bits (210), Expect = 7e-18
 Identities = 38/42 (90%), Positives = 41/42 (97%)
 Frame = -2

Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 72
           K+KLAKKLKQNR +PQWVR+RTGNTIRYNAKRRHWRRTKLKL
Sbjct: 10  KQKLAKKLKQNRSVPQWVRLRTGNTIRYNAKRRHWRRTKLKL 51


>AE013599-3798|AAF47154.1|   51|Drosophila melanogaster CG3997-PA
           protein.
          Length = 51

 Score = 88.6 bits (210), Expect = 7e-18
 Identities = 38/42 (90%), Positives = 41/42 (97%)
 Frame = -2

Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 72
           K+KLAKKLKQNR +PQWVR+RTGNTIRYNAKRRHWRRTKLKL
Sbjct: 10  KQKLAKKLKQNRSVPQWVRLRTGNTIRYNAKRRHWRRTKLKL 51


>AF012422-1|AAB65802.1|   51|Drosophila melanogaster ribosomal
           protein 46 protein.
          Length = 51

 Score = 86.2 bits (204), Expect = 4e-17
 Identities = 37/42 (88%), Positives = 40/42 (95%)
 Frame = -2

Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 72
           K+KLAKKLKQNR +PQWVR+ TGNTIRYNAKRRHWRRTKLKL
Sbjct: 10  KQKLAKKLKQNRSVPQWVRLATGNTIRYNAKRRHWRRTKLKL 51


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,758,754
Number of Sequences: 53049
Number of extensions: 416988
Number of successful extensions: 914
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)