Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30030
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal prote...    88   6e-18
AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal pro...    88   6e-18
AF039037-4|AAC48229.3|  311|Caenorhabditis elegans Protein kinas...    30   1.3  
Z83216-3|CAB05674.2|  232|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z82269-6|CAB05206.3|  809|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AL021488-7|CAJ43918.1|  809|Caenorhabditis elegans Hypothetical ...    29   4.0  
AF000197-3|AAB52898.2|  109|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 39 protein.
          Length = 51

 Score = 87.8 bits (208), Expect = 6e-18
 Identities = 37/42 (88%), Positives = 41/42 (97%)
 Frame = -2

Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 72
           KRKLAKK KQNRP+PQWVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 10  KRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51


>AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal
           protein L39 protein.
          Length = 51

 Score = 87.8 bits (208), Expect = 6e-18
 Identities = 37/42 (88%), Positives = 41/42 (97%)
 Frame = -2

Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 72
           KRKLAKK KQNRP+PQWVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 10  KRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51


>AF039037-4|AAC48229.3|  311|Caenorhabditis elegans Protein kinase
           protein 34 protein.
          Length = 311

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
 Frame = +3

Query: 75  LELCPSPVTPLSVISNSVSCAHPY----PLRNGSVLFQLFGQFAL-NNKRLNENYFSVRR 239
           L++ P P++PLSV++N      PY    PL  GS     FGQ AL +N+R  E   +++R
Sbjct: 4   LQVVPPPISPLSVLANHPD--RPYEVLKPLGQGS-----FGQVALVSNRRYPEMLAALKR 56


>Z83216-3|CAB05674.2|  232|Caenorhabditis elegans Hypothetical
           protein C08F11.3 protein.
          Length = 232

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +1

Query: 481 AHLITYLVISYIFFLLIFTFRHVFS 555
           +++ T+L+I Y+ F+L FT+ HV +
Sbjct: 167 SNIFTFLIIFYLVFILRFTYIHVIT 191


>U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical
           protein B0244.6 protein.
          Length = 982

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +1

Query: 463 FII*VQAHLITYLVISYIFFLLIFTFRHVFSGFNFKLLTCIKHV*KSLSY*LTIVLVL 636
           FII   A LIT +++S++F  L F  R      ++     + H    L + LT ++V+
Sbjct: 813 FIIVSFAFLITIIILSFVFICLSFHIRKAKKLGSYTSSQTLHHARGRLGWTLTAIIVI 870


>Z82269-6|CAB05206.3|  809|Caenorhabditis elegans Hypothetical
           protein F52G2.1a protein.
          Length = 809

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 505 ISYIFFLLIFTFRHVFSGFNFKLLTCIKHV*KSLS 609
           +S  +F L+F    +FSG NF+    + H+ K  S
Sbjct: 8   VSLSYFFLVFFLLFIFSGINFQSFLQLLHIFKMAS 42


>AL021488-7|CAJ43918.1|  809|Caenorhabditis elegans Hypothetical
           protein F52G2.1a protein.
          Length = 809

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 505 ISYIFFLLIFTFRHVFSGFNFKLLTCIKHV*KSLS 609
           +S  +F L+F    +FSG NF+    + H+ K  S
Sbjct: 8   VSLSYFFLVFFLLFIFSGINFQSFLQLLHIFKMAS 42


>AF000197-3|AAB52898.2|  109|Caenorhabditis elegans Hypothetical
           protein T21G5.2 protein.
          Length = 109

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +1

Query: 379 PLSVSARQFRSDITIKXXXXXXXXX-IFYFII*VQAHLITYLVISYIFFLLI 531
           P S   +QF + I+I           +  F+I    H+ +YL + + +FL I
Sbjct: 7   PFSTMTQQFSTSISINSPLFKCSFIFLIQFVIFTYIHIFSYLCVLFNYFLFI 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,516,956
Number of Sequences: 27780
Number of extensions: 226347
Number of successful extensions: 528
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)