Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30030
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.7  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    23   3.5  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.5  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      23   3.5  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   6.1  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 222 YFSVRRPPWLAREAMGGRWHVSLKI 296
           Y  + RP W A  A G  +H+ L I
Sbjct: 38  YSDLVRPHWRAFPAPGKHFHIGLAI 62


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 484 HLITYLVISYIFFLLI 531
           HLIT L+ S++  LLI
Sbjct: 10  HLITVLLFSFVVILLI 25


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 635 NTRTIVS*YDNDF*TCLIQVSNLKLKPLKTCLKVNISKKKIYEIT 501
           NT+  V+ YD D  +C +Q++      +K C  VN     I E+T
Sbjct: 106 NTKNCVNPYDRDSLSCWLQMTK-HHNFIKVC-SVNDVNMTITELT 148


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 484 HLITYLVISYIFFLLI 531
           HLIT L+ S++  LLI
Sbjct: 10  HLITVLLFSFVVILLI 25


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/50 (22%), Positives = 26/50 (52%)
 Frame = +1

Query: 502 VISYIFFLLIFTFRHVFSGFNFKLLTCIKHV*KSLSY*LTIVLVLCNCLL 651
           ++S +F+ ++     + +     L+TC K V KS  + + + L + + L+
Sbjct: 38  IVSIVFYSVLMIISAIGNTTVLILITCRKRVSKSRIHIMLMHLAIADLLV 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,462
Number of Sequences: 438
Number of extensions: 2878
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)