Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30030
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31985.1 68417.m04549 60S ribosomal protein L39 (RPL39C)            80   1e-15
At2g25210.1 68415.m03017 60S ribosomal protein L39 (RPL39A)            80   1e-15
At3g02190.1 68416.m00196 60S ribosomal protein L39 (RPL39B) simi...    78   6e-15
At1g52510.1 68414.m05928 hydrolase, alpha/beta fold family prote...    29   2.8  

>At4g31985.1 68417.m04549 60S ribosomal protein L39 (RPL39C)
          Length = 51

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 32/40 (80%), Positives = 37/40 (92%)
 Frame = -2

Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 78
           K+KL KK++QNRPIP W+R+RT NTIRYNAKRRHWRRTKL
Sbjct: 10  KKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKL 49


>At2g25210.1 68415.m03017 60S ribosomal protein L39 (RPL39A) 
          Length = 44

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 32/40 (80%), Positives = 37/40 (92%)
 Frame = -2

Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 78
           K+KL KK++QNRPIP W+R+RT NTIRYNAKRRHWRRTKL
Sbjct: 3   KKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKL 42


>At3g02190.1 68416.m00196 60S ribosomal protein L39 (RPL39B) similar
           to ribosomal protein L39 GB:P51424 [Arabidopsis
           thaliana]
          Length = 51

 Score = 77.8 bits (183), Expect = 6e-15
 Identities = 31/40 (77%), Positives = 36/40 (90%)
 Frame = -2

Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 78
           K+KL KK++QNRPIP W+R+RT N IRYNAKRRHWRRTKL
Sbjct: 10  KKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKL 49


>At1g52510.1 68414.m05928 hydrolase, alpha/beta fold family protein
           low similarity to SP|P22643 Haloalkane dehalogenase (EC
           3.8.1.5) {Xanthobacter autotrophicus}; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 380

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +3

Query: 87  PSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLNENYFSVRRPPWLARE 260
           PS V  L+++++ ++ + P P     +   LFG+F   N  L E +     P  L  E
Sbjct: 220 PSKVEKLAILNSPLTVSSPVPGLFKQLRIPLFGEFTCQNAILAERFIEGGSPYVLKNE 277


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,499,022
Number of Sequences: 28952
Number of extensions: 199657
Number of successful extensions: 429
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)