Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30027
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   137   1e-33
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   137   2e-33
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   2.0  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.5  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    27   3.5  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    26   6.1  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   6.1  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    26   6.1  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    25   8.0  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   8.0  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   8.0  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   8.0  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  137 bits (332), Expect = 1e-33
 Identities = 65/95 (68%), Positives = 75/95 (78%), Gaps = 1/95 (1%)
 Frame = +2

Query: 260 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRS 439
           GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 81  GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRT 140

Query: 440 SDRWKAQVIEALRRAKFKFPGRQRSTYQRS-GVSQ 541
            D  +A  IEALRR ++KFPG+QR    +  G SQ
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQ 175



 Score =  120 bits (290), Expect = 2e-28
 Identities = 53/66 (80%), Positives = 60/66 (90%)
 Frame = +3

Query: 57  KNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGRICC 236
           KNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC 
Sbjct: 13  KNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICA 72

Query: 237 NKYLVK 254
           NKYLVK
Sbjct: 73  NKYLVK 78



 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 22/52 (42%), Positives = 32/52 (61%)
 Frame = +1

Query: 481 CQVQVPRTSKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 636
           CQ + P   +I VSKKWGF++Y RDE+ + R  G +  DGC  ++  + G L
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  137 bits (331), Expect = 2e-33
 Identities = 65/95 (68%), Positives = 75/95 (78%), Gaps = 1/95 (1%)
 Frame = +2

Query: 260 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRS 439
           GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 81  GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRT 140

Query: 440 SDRWKAQVIEALRRAKFKFPGRQRSTYQRS-GVSQ 541
            D  +A  IEALRR ++KFPG+QR    +  G SQ
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQ 175



 Score =  120 bits (290), Expect = 2e-28
 Identities = 53/66 (80%), Positives = 60/66 (90%)
 Frame = +3

Query: 57  KNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGRICC 236
           KNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC 
Sbjct: 13  KNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICA 72

Query: 237 NKYLVK 254
           NKYLVK
Sbjct: 73  NKYLVK 78



 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 22/52 (42%), Positives = 32/52 (61%)
 Frame = +1

Query: 481 CQVQVPRTSKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 636
           CQ + P   +I VSKKWGF++Y RDE+ + R  G +  DGC  ++  + G L
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +3

Query: 78  SRFCRGVPDP-KIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEAG 224
           ++FC  V +  KI   +  +KRA +D   LC+  +S + E ++  +LE+G
Sbjct: 45  TKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESG 94


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 394  STLRLAKRTTHPSLEPISSSAR-*HFIDADNVERVKSHAD 278
            +T +LAKR T PSL P  S+    H I  +  ++ KS A+
Sbjct: 957  TTTKLAKRITQPSLSPARSTVTITHNIATEAKKKSKSAAN 996


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 228 ICCNKYLVKTAERISSISA*DFTL 299
           ICC KY V T  R + I    FTL
Sbjct: 9   ICCAKYFVNTKSRFNEILPPRFTL 32


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 78  SRFCRGVPDPKIRIFDLGKKRANVDDFP-LCVHLVSDE 188
           S FC   PDPK       K  A+ DD P +  H+ S++
Sbjct: 84  SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 123  DLGKKRANVDDFPLCVHLVSDEYEQL 200
            ++ KKRA  DD    + +VS EYE L
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENL 1058


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +2

Query: 437 SSDRWKAQVIEALRRAKFKFPGRQR-STYQRSGVSQSMNVMSLRSCVKRAASPMTAASCS 613
           SS + K    E ++++K K     R S++ R+     MN M LR   +   S   AAS +
Sbjct: 188 SSPKPKPAKSEPVKQSKPKATETARPSSFSRNEDRVKMNRMRLRIAERLKESQNRAASLT 247

Query: 614 TARNMDLSTL 643
           T    D+S +
Sbjct: 248 TFNECDMSAV 257


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 102 DPKIRIFDLGKKRANVDDFPLCV-HLVSDEYEQLSSEALEA 221
           DPK+R+F    KRA   +   C   LV+ +   + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 263 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 367
           +D  H+RM ++ FH   IN MLS +  D  +  MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1115

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -2

Query: 269  DPFRSLYEVL-IAADTSCLQSL*AQLFIFVGHQVHAQWKVVNVRSLLTQIEDT 114
            DP RS Y V+ +      L+ L     IFVGH +   ++++N+     Q+ DT
Sbjct: 963  DPDRSPYNVVPLKVAYKKLRLLVNAGCIFVGHGLQKDFRIINLLVPPEQVVDT 1015


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 88  VGVYLIPRSVSSIWV 132
           +GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,466
Number of Sequences: 5004
Number of extensions: 67000
Number of successful extensions: 224
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)