Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30027
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 141 6e-34
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 139 2e-33
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 138 4e-33
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 1.2
02_02_0317 + 8893593-8894207 31 1.2
11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931 29 3.6
05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517 29 4.8
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 6.3
07_03_0604 + 19903654-19904598 28 6.3
04_01_0289 + 3830052-3831134,3831141-3831230,3831494-3831525,383... 28 6.3
08_02_0567 + 18769742-18769790,18769928-18771351 28 8.4
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 141 bits (341), Expect = 6e-34
Identities = 65/92 (70%), Positives = 75/92 (81%)
Frame = +2
Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 430
K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++S
Sbjct: 78 KNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 137
Query: 431 VRSSDRWKAQVIEALRRAKFKFPGRQRSTYQR 526
VR + EALRRAKFKFPGRQ+ + R
Sbjct: 138 VRCKESNAKHAEEALRRAKFKFPGRQKIIHSR 169
Score = 115 bits (276), Expect = 4e-26
Identities = 50/68 (73%), Positives = 57/68 (83%)
Frame = +3
Query: 57 KNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGRICC 236
KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +SSEALEA RI C
Sbjct: 13 KNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIAC 72
Query: 237 NKYLVKTA 260
NKY+ K A
Sbjct: 73 NKYMTKNA 80
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = +1
Query: 496 PRTSKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 636
P KI S+KWGFTK+ R+E+ KL+ EGR+ +DG Q HG L
Sbjct: 160 PGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRL 206
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 139 bits (336), Expect = 2e-33
Identities = 64/87 (73%), Positives = 71/87 (81%)
Frame = +2
Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 430
K GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++S
Sbjct: 74 KSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 133
Query: 431 VRSSDRWKAQVIEALRRAKFKFPGRQR 511
VR EALRRAKFKFPGRQ+
Sbjct: 134 VRCKPNNAVHASEALRRAKFKFPGRQK 160
Score = 110 bits (264), Expect = 1e-24
Identities = 48/68 (70%), Positives = 57/68 (83%)
Frame = +3
Query: 57 KNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGRICC 236
KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA RI C
Sbjct: 9 KNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIAC 68
Query: 237 NKYLVKTA 260
NKY+ K+A
Sbjct: 69 NKYMTKSA 76
Score = 48.0 bits (109), Expect = 7e-06
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +1
Query: 496 PRTSKIYVSKKWGFTKYERDEFEKLREEGRLANDG 600
P KI S+KWGFTK+ RDE+ +L+ EGR+ DG
Sbjct: 156 PGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDG 190
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 138 bits (334), Expect = 4e-33
Identities = 65/87 (74%), Positives = 71/87 (81%)
Frame = +2
Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 430
K GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT ARVRIGQ ++S
Sbjct: 385 KHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLS 444
Query: 431 VRSSDRWKAQVIEALRRAKFKFPGRQR 511
VR D A EALRRAKFKFPGRQR
Sbjct: 445 VRCRDANAAHAQEALRRAKFKFPGRQR 471
Score = 118 bits (285), Expect = 3e-27
Identities = 52/68 (76%), Positives = 59/68 (86%)
Frame = +3
Query: 57 KNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGRICC 236
KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEALEA RI C
Sbjct: 320 KNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEALEAARIAC 379
Query: 237 NKYLVKTA 260
NKY+ K A
Sbjct: 380 NKYMAKHA 387
Score = 48.8 bits (111), Expect = 4e-06
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +1
Query: 496 PRTSKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHG 630
P ++ S KWGFT+++RDE+ KL+ EGR+ DG + HG
Sbjct: 467 PGRQRVIFSAKWGFTRFKRDEYLKLKSEGRIVPDGVNAKLLTRHG 511
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -1
Query: 423 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 331
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>02_02_0317 + 8893593-8894207
Length = 204
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -3
Query: 667 GSQPEPSSKRREVHVP---GGTARCSRHWRGGP 578
G +P P++ R +HVP GG R RHWR P
Sbjct: 3 GRRPRPAAGTR-IHVPQPCGGEIRWERHWRPDP 34
>11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931
Length = 478
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 420 PSCPCALVTGGRHRSSRLCAVPSSSSPDVKDLRIKEV 530
P P L GRH +R+ +S S + DLR++E+
Sbjct: 210 PESPRWLAMRGRHADARVVLARTSDSAEEADLRLEEI 246
>05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517
Length = 208
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = -3
Query: 316 DADNVERVKSHADMELILSAVFTRYLLQQIR-----PASKASELSCSYSSDTKCTHSGKS 152
+ DN+ V AD L+++A +++Q + PA+ A+ C+ S TK H G+
Sbjct: 143 NCDNLPVVPLGADQPLVMAACKRAAVIKQQQQASSSPATAAAAAQCAVPSSTKAIHVGEE 202
Query: 151 S 149
+
Sbjct: 203 A 203
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 377 GKPQGTVARVRIGQPIMSVRSSD 445
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>07_03_0604 + 19903654-19904598
Length = 314
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 622 PGGTARCSRHWRGGPLHAASQTHH 551
PGG R R G P+H A + HH
Sbjct: 80 PGGRRRRPRRVEGAPVHRARRLHH 103
>04_01_0289 +
3830052-3831134,3831141-3831230,3831494-3831525,
3833690-3834623
Length = 712
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 144 NVDDFPLCVHLVSDEYEQLSSEALEAGR-ICC 236
NV++ P + L+ DE +++ E L AGR I C
Sbjct: 679 NVEEIPTSMDLMKDENDKIQLEILTAGRNIAC 710
>08_02_0567 + 18769742-18769790,18769928-18771351
Length = 490
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +2
Query: 362 MRGAFGKPQG--TVARVRIGQPIMSVRSSDRW-KAQVIEALRRAKFKFPGRQR 511
MR G+ G A +RI + I + ++++ +AQV+EA RR F+ PGR R
Sbjct: 24 MRTNGGEQMGGSEAAHIRIDEIIRRLDAAEKEAQAQVVEA-RREIFRVPGRHR 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,588,654
Number of Sequences: 37544
Number of extensions: 502933
Number of successful extensions: 1520
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1519
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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