Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30027
(708 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041) 83 3e-16
SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053) 38 0.008
SB_34369| Best HMM Match : Herpes_US9 (HMM E-Value=0.64) 33 0.17
SB_40410| Best HMM Match : ANF_receptor (HMM E-Value=0) 31 0.92
SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09) 31 1.2
SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_9876| Best HMM Match : TSNR_N (HMM E-Value=7.6) 29 3.7
SB_10713| Best HMM Match : Peptidase_C32 (HMM E-Value=3.3) 29 4.9
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 29 4.9
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05) 28 8.5
SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25) 28 8.5
>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
Length = 50
Score = 82.6 bits (195), Expect = 3e-16
Identities = 39/50 (78%), Positives = 43/50 (86%)
Frame = +2
Query: 362 MRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQR 511
MRGAFGKPQGTVARV IGQ I+S+R+ D KA IEALRRAKFKFPGRQ+
Sbjct: 1 MRGAFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFPGRQK 50
>SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)
Length = 659
Score = 37.9 bits (84), Expect = 0.008
Identities = 27/81 (33%), Positives = 39/81 (48%)
Frame = -3
Query: 640 RREVHVPGGTARCSRHWRGGPLHAASQTHHVHTL*NPTSLIRRSLTSGELELGTAQSLDD 461
+R++HV G + + H GG L Q H + NP++ +L+ LE TA +
Sbjct: 10 KRQLHVRGLSRKWVMH-PGGRLPVKRQLHLISAPVNPSTRFTPTLSRMSLETVTAAPIPT 68
Query: 460 LCLPPVTRAHGHDGLSNANTC 398
V A+ DGLSNAN C
Sbjct: 69 QTSRSVALAY--DGLSNANVC 87
>SB_34369| Best HMM Match : Herpes_US9 (HMM E-Value=0.64)
Length = 361
Score = 33.5 bits (73), Expect = 0.17
Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 1/164 (0%)
Frame = -3
Query: 637 REVHVPGGTARCSRHWRGGPLHAASQTHHVHTL*NPTSLIRRSLTSGELELGTAQSLDDL 458
R H+P G +H P+HA S + N +++ LT GE L + +
Sbjct: 15 RLFHLPSGNRLLVQHPPAFPIHAQSYLTRRRAVFNTMAVLHTVLTKGEQTLFFERPIRRP 74
Query: 457 CLPPVTRAHGHDGLSNANTCYSTLRLAKRTTHPSLEPISSSAR*HFIDADNVERVKSHAD 278
+ + S N+ Y+ R + TT +L PI++ H A+++ + A+
Sbjct: 75 RFVALRQC------SLFNSWYNLEREHQITTIAALPPIATLPAGH-QTAESIVETINRAE 127
Query: 277 MELILSAVFTRYLLQQIR-PASKASELSCSYSSDTKCTHSGKSS 149
E++ + + R Q+ P +A + C T+C G+ S
Sbjct: 128 SEILTAKLDPREDRAQVALPKIEALYICCDIVDRTQCLSLGEPS 171
>SB_40410| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 888
Score = 31.1 bits (67), Expect = 0.92
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 460 GHRGSAPCQVQVPRTSKIYVSKKWGFTKYERDEF 561
G +G PC QV T +Y K GF Y+ D F
Sbjct: 368 GAKGFEPCGPQVKITKPLYERLKSGFVTYQEDAF 401
>SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09)
Length = 730
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -3
Query: 319 IDADNVERVKSHADMELILSAVFTRYLLQQIRPASKASELSCSYSSDTK 173
+ A+ V+R+ SH M+ + S + Y +PA+K + L C Y+ K
Sbjct: 16 LTAERVQRLLSHTRMKEV-SRICKVYFSSDTKPAAKTNNLLCQYNEIKK 63
>SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1278
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -3
Query: 511 SLTSGELELGTAQSLDDLCLPPVTRAHGHDGLSNANT--CYSTLRLAKRTT 365
S ++G + T D+C+P + HGH +ANT CY + A +T
Sbjct: 71 SCSAGHYVVRTGNPFTDICIP--CQCHGHSDQCDANTGICYVRIYTADLST 119
>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 216 PKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQ 100
PK SS V+ RT AR ++R++ Y ++YG W Q
Sbjct: 295 PKFFSSIVYYGRT--ARFDYGKRRNMKRYGKKKYGKWRQ 331
>SB_9876| Best HMM Match : TSNR_N (HMM E-Value=7.6)
Length = 197
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 532 PTSLIRRSLTSGELELGTAQSLDDLCLPPVTRAHGHDGLSNANTC 398
P+ +RR+ + LG L +PPV R H G+ N +TC
Sbjct: 103 PSLKVRRATVASIESLGEGHRKGSLFMPPVQRGKKH-GVINIHTC 146
>SB_10713| Best HMM Match : Peptidase_C32 (HMM E-Value=3.3)
Length = 615
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = +1
Query: 259 RKGSVPYPHET--SPFPRYPHQ*NVIVRW 339
+KGS+ +PH + S +P+YP +++VR+
Sbjct: 101 KKGSIRFPHSSASSDYPQYPEGRDLVVRF 129
>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
Length = 1023
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = -2
Query: 413 QCEHVLQYPEACQTHHASQSGAYQLQRTITFY*CG*RGKGEVSCGYG 273
+C V Q P AC + S GA + Y C K V CG G
Sbjct: 535 KCPDVTQAPVACTNGYYSGDGATECTLCPAGYSCADATKSPVPCGKG 581
>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
Length = 726
Score = 27.9 bits (59), Expect = 8.5
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +1
Query: 370 CVWQASGYCSTCSHWTTHHV 429
C W +G C C HW HV
Sbjct: 79 CYWIRTGCCHLCWHWRPLHV 98
>SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25)
Length = 1597
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -2
Query: 188 FVGHQVHAQWKVVNVRSLLTQIEDTDLGIRYTPTEPRFRIRFI 60
FVGH + ++V+N+ Q+ DT +G+ + P + +RF+
Sbjct: 465 FVGHGLKKDFRVINILVPKGQVFDT-VGLFHLPRQRYLSLRFL 506
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,163,226
Number of Sequences: 59808
Number of extensions: 546361
Number of successful extensions: 1681
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1679
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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