Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30027
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont...   136   1e-32
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near...   135   2e-32
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi...   135   2e-32
At4g24120.1 68417.m03462 transporter, putative similar to iron-p...    29   2.3  
At5g47870.1 68418.m05914 expressed protein                             29   4.0  
At3g59190.1 68416.m06599 F-box family protein contains F-box dom...    29   4.0  
At5g24280.1 68418.m02856 expressed protein ; expression supporte...    28   5.3  
At1g33410.1 68414.m04136 expressed protein                             27   9.2  
At1g19510.1 68414.m02430 myb family transcription factor contain...    27   9.2  

>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
           contains Pfam profile: PF00826: Ribosomal L10
          Length = 221

 Score =  136 bits (330), Expect = 1e-32
 Identities = 64/92 (69%), Positives = 71/92 (77%)
 Frame = +2

Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 430
           K  GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT ARV IGQ ++S
Sbjct: 78  KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137

Query: 431 VRSSDRWKAQVIEALRRAKFKFPGRQRSTYQR 526
           VR  D       EALRRAKFKFPGRQ+    R
Sbjct: 138 VRCKDNHGVHAQEALRRAKFKFPGRQKIIVSR 169



 Score =  117 bits (282), Expect = 7e-27
 Identities = 66/131 (50%), Positives = 81/131 (61%), Gaps = 10/131 (7%)
 Frame = +3

Query: 57  KNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGRICC 236
           K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +SSEALEA RI C
Sbjct: 13  KGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIAC 72

Query: 237 NKYLVKTAERIS---SISA*DFTLSTLSASIKCYRALEL-------IGSRLGCVVRLASL 386
           NKY+VK+A + +    I    F +  ++  + C  A  L        G  LG   R+A  
Sbjct: 73  NKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIG 132

Query: 387 RVL*HVFALDN 419
           +VL  V   DN
Sbjct: 133 QVLLSVRCKDN 143



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 23/47 (48%), Positives = 29/47 (61%)
 Frame = +1

Query: 496 PRTSKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 636
           P   KI VS+KWGFTK+ R E+ KLR   R+  DG   ++   HGPL
Sbjct: 160 PGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPL 206


>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
           identical to ribosomal protein L10.e, Wilm's tumor
           suppressor homologue, gi|17682 (Z15157), however
           differences in sequence indicate this is a different
           member of the L10 family
          Length = 221

 Score =  135 bits (327), Expect = 2e-32
 Identities = 64/92 (69%), Positives = 71/92 (77%)
 Frame = +2

Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 430
           K  GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT ARV IGQ ++S
Sbjct: 78  KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137

Query: 431 VRSSDRWKAQVIEALRRAKFKFPGRQRSTYQR 526
           VR  D       EALRRAKFKFPGRQ+    R
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFPGRQKIIVSR 169



 Score =  116 bits (278), Expect = 2e-26
 Identities = 51/68 (75%), Positives = 58/68 (85%)
 Frame = +3

Query: 57  KNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGRICC 236
           K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +SSEALEA RI C
Sbjct: 13  KGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVSSEALEAARIAC 72

Query: 237 NKYLVKTA 260
           NKY+VK+A
Sbjct: 73  NKYMVKSA 80



 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 23/47 (48%), Positives = 31/47 (65%)
 Frame = +1

Query: 496 PRTSKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 636
           P   KI VS+KWGFTK+ R ++ KLR+E R+  DG   ++   HGPL
Sbjct: 160 PGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPL 206


>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
           Wilm's tumor suppressor protein-related similar to tumor
           suppressor GI:575354 from [Oryza sativa]
          Length = 220

 Score =  135 bits (327), Expect = 2e-32
 Identities = 64/92 (69%), Positives = 71/92 (77%)
 Frame = +2

Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 430
           K  GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT ARV IGQ ++S
Sbjct: 78  KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137

Query: 431 VRSSDRWKAQVIEALRRAKFKFPGRQRSTYQR 526
           VR  D       EALRRAKFKFPGRQ+    R
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFPGRQKIIVSR 169



 Score =  116 bits (279), Expect = 2e-26
 Identities = 51/68 (75%), Positives = 58/68 (85%)
 Frame = +3

Query: 57  KNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGRICC 236
           K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +SSEALEA RI C
Sbjct: 13  KGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIAC 72

Query: 237 NKYLVKTA 260
           NKY+VK+A
Sbjct: 73  NKYMVKSA 80



 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 24/47 (51%), Positives = 31/47 (65%)
 Frame = +1

Query: 496 PRTSKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 636
           P   KI VS+KWGFTK+ R +F KLR+E R+  DG   ++   HGPL
Sbjct: 160 PGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPL 206


>At4g24120.1 68417.m03462 transporter, putative similar to
           iron-phytosiderophore transporter protein yellow stripe
           1 [Zea mays] GI:10770865; contains Pfam profile PF03169:
           OPT oligopeptide transporter protein
          Length = 665

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 246 LVKTAERISSISA*DF-TLSTLSASIKCYRALELIGSRLGCVVRLASLRVL*HVFALDNP 422
           L+K+   +S I   DF T      S K   A ++IG+ +GC+V   S  +    F + NP
Sbjct: 468 LIKSVVSVSCILMQDFKTAHYTMTSPKAMFASQMIGTVVGCIVTPLSFFLFYKAFDIGNP 527

Query: 423 S 425
           +
Sbjct: 528 N 528


>At5g47870.1 68418.m05914 expressed protein
          Length = 199

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 20/73 (27%), Positives = 30/73 (41%)
 Frame = +2

Query: 281 RMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQ 460
           R++L PF  + +N+ + C+G      G+ G     +  V       PI    SS      
Sbjct: 23  RIKLSPFRTVAVNRGVRCSGG-----GVGGGDAGKKKAVPNSNYVVPIDKFSSSSSITRP 77

Query: 461 VIEALRRAKFKFP 499
           +IE LR    K P
Sbjct: 78  LIEILRDLNKKIP 90


>At3g59190.1 68416.m06599 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 388

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/36 (50%), Positives = 19/36 (52%)
 Frame = +3

Query: 135 KRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNK 242
           K AN  DF + V  V   Y  LSSEALE    CC K
Sbjct: 297 KGANAADFMMGVCNVKTMY--LSSEALEVLTFCCKK 330


>At5g24280.1 68418.m02856 expressed protein ; expression supported by
            MPSS
          Length = 1634

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 180  SDEYEQLSSEALEAGRICCNKYLV 251
            SDEY +  SEA   GR   N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454


>At1g33410.1 68414.m04136 expressed protein
          Length = 1459

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 102  DP-KIRIFDLGKKRANVDDFPLCVHLVSDEY-EQLSSEALEAGRICCNKYLV 251
            DP K   +  G+  ANV  F L ++L++D Y   +S+   E  RIC  ++++
Sbjct: 979  DPTKAATYTRGRLWANVFKFTLDLNLLNDAYCAIISNPDEEIKRICLRRFII 1030


>At1g19510.1 68414.m02430 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 100

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 96  VPDPKIRIFDLGKKRANVDDFPL 164
           VP PK +  D+G K   +DDF L
Sbjct: 69  VPLPKYKTVDVGSKSRGIDDFDL 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,633,186
Number of Sequences: 28952
Number of extensions: 372654
Number of successful extensions: 1119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)