Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30026X
(380 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 29 0.33
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 0.57
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 27 0.99
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 27 1.3
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 26 2.3
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 26 2.3
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 25 4.0
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 25 5.3
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 25 5.3
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 24 7.0
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 24 7.0
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 24 9.3
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 28.7 bits (61), Expect = 0.33
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 46 RGDNLIQLYNNFLTTFESKINPLSLVEIIAH--IVEQYVNKRDAVTFLEKVETKVKMNDE 219
RG N+I L TT+ES+ NP SL+ + + + D ++ VK+N
Sbjct: 861 RGGNIIPLQQPGYTTYESRNNPYSLLIAMDNNGFASGSLYIDDGISMQTNSSLSVKLNSN 920
Query: 220 ALALCKVLQG 249
+ + V+ G
Sbjct: 921 SNTITCVVSG 930
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.9 bits (59), Expect = 0.57
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 246 RTNYIEQLNDYDAAEKIIEHLESTLEDADGVTPVH 350
+ NY+ ++ DY E + + L+S L+ + P H
Sbjct: 3056 KQNYVNRMVDYKLRESVKDQLKSLLDGFSDIIPSH 3090
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 27.1 bits (57), Expect = 0.99
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 115 SLVEIIAHIVEQYVNKRDAVTFLEKVETKVKMNDEALALCKVLQGQITLN 264
S+ + A E++ + +++ LEK KVK D LA+ VL ++ LN
Sbjct: 590 SIYLLYADFEEKFGKAKRSISILEKAADKVKTADR-LAIYNVLLVKVALN 638
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 26.6 bits (56), Expect = 1.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 46 RGDNLIQLYNNFLTTFESKINPLSLV 123
RG N+I + LTT E+K NP L+
Sbjct: 858 RGGNIIPMQKPSLTTHETKQNPYDLL 883
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.8 bits (54), Expect = 2.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 267 LNDYDAAEKIIEHLESTLEDAD 332
+ YDA +K IE LES + D D
Sbjct: 856 MEQYDARKKEIEELESKMSDFD 877
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 25.8 bits (54), Expect = 2.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 46 RGDNLIQLYNNFLTTFESKINPLSLV 123
RG +++ + LTT+ES+ NP +L+
Sbjct: 836 RGGSVLPMQQPSLTTYESRQNPFNLL 861
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 4.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 327 HLRVYFLNVQLFSRLHHNHSAVQCNLSL*H 238
HL FL+ +LF H +VQC+ L H
Sbjct: 189 HLFPQFLSAELFESASTVHRSVQCDNCLAH 218
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 24.6 bits (51), Expect = 5.3
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +1
Query: 82 LTTFESKINPLSLVEIIA 135
+ T ESKIN LSLV+I++
Sbjct: 443 VNTRESKINALSLVQILS 460
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 24.6 bits (51), Expect = 5.3
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +1
Query: 67 LYNNFLTTFESKINPLSLVEIIAHIVEQYVNKRDAVTFLEKVETKVKMNDEALALCKVLQ 246
+ ++ L ESKI+ L + + +V QYV + F E + + + LCK LQ
Sbjct: 575 MIDSSLQLLESKISDLKVRLALIDLVSQYV-----ILFYEPDFDSIFLRRVLIILCKKLQ 629
Query: 247 GQIT 258
+ T
Sbjct: 630 EEPT 633
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 24.2 bits (50), Expect = 7.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3
Query: 366 TYKIVRELESHHQH 325
+YK VRE+ESH H
Sbjct: 476 SYKYVREIESHRIH 489
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 24.2 bits (50), Expect = 7.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 28 KNPALQRGDNLIQLYNNFLTTFESKIN 108
+ P L ++++QLYNNF E ++
Sbjct: 733 RQPLLSLTNDILQLYNNFYVLCEETMD 759
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 23.8 bits (49), Expect = 9.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 4 TLKLQEFVKNPALQRGD 54
T ++ EFV+N LQRGD
Sbjct: 480 TPEVPEFVQNRVLQRGD 496
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,549,241
Number of Sequences: 5004
Number of extensions: 29134
Number of successful extensions: 119
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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