Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30025X
         (414 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    27   1.5  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    26   2.7  
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    25   3.5  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   6.1  

>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 10/24 (41%), Positives = 19/24 (79%), Gaps = 2/24 (8%)
 Frame = +2

Query: 2   SLVCTCDYFVD--SGPFLYAHRLL 67
           +++C C+YF+D  +GPFL +++ L
Sbjct: 322 AIMCRCEYFLDMLAGPFLESNQEL 345


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 150 LCIADLKQSMKYRDF*ASYQASLYGSNFA 236
           +CI  LK  +  R+F +S  + L+G+NF+
Sbjct: 661 ICIKTLKVIVDLREFRSSLPSILHGNNFS 689


>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 205 IKHHCTEVTSRTAKLLLGGHSTKTV*LHDCFLY*CFKRICNNRVMKFL 348
           +KHH  E T+R  K +  G  ++        LY C +   + +V K L
Sbjct: 166 VKHHFEECTARVTKKVEQGDKSEDCIEEFFHLYHCARDCADPKVFKVL 213


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 164 ISYAKLKMLHYDWPIKAKF*YKFN 93
           ISY +L +LH    +K +F + FN
Sbjct: 255 ISYLRLSLLHCKEALKTRFDFGFN 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,556,402
Number of Sequences: 5004
Number of extensions: 27019
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)