Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30025X
         (414 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   3.2  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          20   9.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      20   9.6  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 93  IKFVLKFCLYWPVIV 137
           I F+L   LYWP+++
Sbjct: 372 ILFMLFIILYWPILL 386


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 388 NHIYIYIML*NVVTEISLRGYYKFF 314
           NH Y   ML N +    +RG + FF
Sbjct: 236 NHNYPPFMLSNSLNFPQIRGEFYFF 260


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 388 NHIYIYIML*NVVTEISLRGYYKFF 314
           NH Y   ML N +    +RG + FF
Sbjct: 236 NHNYPPFMLSNSLNFPQIRGEFYFF 260


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,413
Number of Sequences: 438
Number of extensions: 2042
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)