Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30024
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    29   0.54 
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    29   0.95 
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.95 
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    28   1.3  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    27   3.8  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    27   3.8  
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|...    26   5.1  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    26   5.1  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   5.1  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   6.7  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    26   6.7  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   8.9  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   8.9  

>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 496 DLEVNSVVFQHGGKLPGDFLAGFVFGVTECNFVV 395
           DLE N +V Q+ G   G+FL G  FG  +  FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 627 FVHGGLKVPVVFEGVSGAITVDDTVIT 547
           F H  +    V  G+ GAIT+DD++IT
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSIIT 133


>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +1

Query: 433 QQESLLEVYPRVGKQQSLLQDHVHRDKQYLKLDNTKGSSDD 555
           ++  +L ++PR+ +  ++L   +H D Q+L    +   SDD
Sbjct: 211 KKTDMLNLFPRIAEHDAVLSTSLHADPQFLDFLESCFRSDD 251


>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 733 LRCAPRLHGLRWRPYLHQVS 674
           L  A +LHG+RW  Y H+VS
Sbjct: 182 LAFASKLHGMRWFMYTHKVS 201


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 200 GSREASDRKRQEEHHGLRHQLWTKDGKEIVK 292
           GS+EA  +K++E+   L+H     D +E +K
Sbjct: 129 GSKEAMQQKKKEKRAALKHYREASDNEEDLK 159


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 108 ELYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 224
           ++++++V+  Y   A+    EYL+EK    I +  K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595


>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 282 SFPSFVHNWWRSPWCSSCRFRS 217
           S+  FV  +  SPW S+CR  S
Sbjct: 144 SYTPFVMQYLNSPWFSACRVES 165


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = +1

Query: 547 SDDRIIYGDSTADTFKHHWYLEP----SMYESDVMFFVYNR--EYNSVMTL 681
           SDDR+  GD+     +  +Y++     +MYE   ++  Y     YN V+ L
Sbjct: 84  SDDRVAGGDALPSASQEKYYVQQIHGLAMYEIHTVYVDYKHLTSYNDVLAL 134


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 190 SPFFSFRYSEHLAIAVSYSPMTTLIYSSPP 101
           +PFF   +S HL    S S  + + YS PP
Sbjct: 343 APFFPLGFSPHLNDESSRSRWSNISYSPPP 372


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 344 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 436
           L+ K+D  A K+ DQ  H K+     +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/61 (22%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
 Frame = +3

Query: 108 ELYMSVVIGEYETAIAKC-SEYLKEKKGE---VIKEAVKRLIENGKRNTMDFATSYGQRM 275
           ++Y+ + + ++E A++ C S Y  + + E   ++   + +  ++G  N +DF T Y  R+
Sbjct: 737 DVYLKI-LNDWEGALSYCNSVYSIDGETEPYYMLLAEISKNYKSGSLNILDFITKYSSRL 795

Query: 276 E 278
           +
Sbjct: 796 D 796


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 394  VLLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 278
            V+L+  + G +  +   L  LL +D +++  +V FDDF+
Sbjct: 1284 VVLLQDIHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 245 GLRHQLWTKDGKEIVKSYF 301
           GL H +W + G EI K +F
Sbjct: 634 GLVHTIWKEKGPEICKGFF 652


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,149,639
Number of Sequences: 5004
Number of extensions: 66403
Number of successful extensions: 279
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)