Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30024
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0294 + 2230539-2230870,2232179-2232574,2232676-2232834,223... 31 1.00
03_01_0259 - 1996427-1998772 31 1.00
11_06_0723 - 26688378-26688385,26689351-26689569,26690100-266901... 30 1.7
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 29 3.0
05_03_0469 + 14439472-14440905 29 3.0
10_01_0030 - 386008-388056,388166-388360,388931-389062,389167-38... 29 4.0
01_01_0777 - 6017131-6017243,6018069-6018339,6018432-6018617,601... 29 4.0
11_06_0722 - 26678873-26680843 29 5.3
11_06_0198 - 21158350-21159528 29 5.3
06_01_1082 - 8847795-8848033,8848511-8848724 28 7.0
05_03_0618 - 16262826-16263097,16263111-16263183 28 7.0
08_01_0692 + 6121443-6122266,6122812-6124798 28 9.3
>12_01_0294 +
2230539-2230870,2232179-2232574,2232676-2232834,
2233109-2233505
Length = 427
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 173 EGKEGRGYQGSREASDRKRQEEHHGLRHQLWTKDGKEIVKSYFPIQFRV 319
EG E + R+A R Q H LR+++ T + I ++Y P+ FR+
Sbjct: 249 EGNEVKMEMTVRDAYQRSMQTLFHWLRNEVNTNKTQIIFRTYAPVHFRL 297
>03_01_0259 - 1996427-1998772
Length = 781
Score = 31.1 bits (67), Expect = 1.00
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 320 IFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSK 424
I ++ V++ N HHALKLI + + +I GDSK
Sbjct: 732 ILVKKNVRICN-HCHHALKLISRYSGRRIVVGDSK 765
>11_06_0723 -
26688378-26688385,26689351-26689569,26690100-26690106,
26690194-26690256,26690329-26690400,26690507-26691681,
26692024-26692626,26692643-26692781
Length = 761
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +1
Query: 367 RPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSLLQDHVHRDKQYLKLDNTK 540
RP R +R L+ + QQES +EV R ++++ ++ + +DKQ + + N++
Sbjct: 580 RPPSLRKQSKLDQVVRRLRMKKQQESTIEVQSR-RRRKTRTKNVISKDKQLINIQNSR 636
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 388 LVDQLEGVMVPFVYELDSLLGEDHSKLDG 302
+V GVM P + +L LLGE+++KL G
Sbjct: 7 IVGATTGVMKPLLSKLTKLLGEEYAKLKG 35
>05_03_0469 + 14439472-14440905
Length = 477
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 414 VTPKTKPARKSPGS--LPPCWKTTEFTSRSCPPRQT 515
+T T+ AR PG+ +PP W+ T+RS PP T
Sbjct: 187 LTAVTEFARGVPGAPTVPPVWEREALTTRSWPPTVT 222
>10_01_0030 -
386008-388056,388166-388360,388931-389062,389167-389538,
389753-389894,392274-392533,392737-393015,394796-394939
Length = 1190
Score = 29.1 bits (62), Expect = 4.0
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Frame = +2
Query: 173 EGKEGRGYQGSREASDRKRQEEHHGLRHQLWTKDGKEIVKSYFPIQFRVIFTEQTVKLIN 352
E KE R + RE R+ +E LR + K+ KE K P+Q + + L N
Sbjct: 515 EEKEKREEEERRER--RRTKEREKKLRRKERLKE-KEKEKEKIPVQLKPYIGTSSSPLSN 571
Query: 353 KRDHHALKLIDQQN---HNKIAFGDSKDKTSKKVSWKFTP 463
A + DQ H+K + D +DK S V+ F+P
Sbjct: 572 S----ATPINDQSPDIAHSKYSASDDEDKDSIVVTESFSP 607
>01_01_0777 -
6017131-6017243,6018069-6018339,6018432-6018617,
6018703-6018735,6018827-6018925,6019042-6019281,
6019747-6020064,6020197-6020254,6020333-6020389,
6020577-6020792,6020885-6021000
Length = 568
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +1
Query: 538 KGSSDDRIIYGDSTADTFKHHWYLEPSMYESDVMFFVYNREYNSVMTLDEDMAANEDREA 717
+ S D R+I + + + H + M +S M + EYN L++D NE +
Sbjct: 427 ENSDDRRVILNNLSQKMNQDHRFSTEVMEKSLQMMHQHFGEYNRCSALNQDNEKNELKAN 486
Query: 718 LGHS 729
GHS
Sbjct: 487 NGHS 490
>11_06_0722 - 26678873-26680843
Length = 656
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -3
Query: 579 GAITVDDTVITRTFRVIELQVLFVSVDMILK*TLLFSNTGVNFQETFLLV 430
G + D + RTFRVIE+++ FV K L++S+ + +F +V
Sbjct: 240 GGLLHGDRCVERTFRVIEVELAFVHDYFYTKYFLIYSSHHLFVTLSFAMV 289
>11_06_0198 - 21158350-21159528
Length = 392
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 104 RRAVYECRHW*IRDRYRQML*ISEGKEGRGYQGSREASDRKRQEEHH 244
++ + +CR W R + + + E +E Y G RE RKR + HH
Sbjct: 270 QQCMQDCRQW--RRQEEEEAAVDE-EEDHNYGGEREQHCRKRCQHHH 313
>06_01_1082 - 8847795-8848033,8848511-8848724
Length = 150
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 601 WYLEPSMYESDVMFFVYNREYNSV 672
W + Y DV+ F YN+EY+ V
Sbjct: 59 WLAGKTFYAGDVLVFKYNKEYHDV 82
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 90 SSWCKCGVRSQRTHGEDEGKQSQSHLGAV 4
S C+CG+RS+R +E + + LG V
Sbjct: 24 SGHCRCGLRSRRCTAREEFRSKEEMLGIV 52
>08_01_0692 + 6121443-6122266,6122812-6124798
Length = 936
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -2
Query: 391 LLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 278
++V GVM P + +L +L+G+++ KL G + FL
Sbjct: 7 IVVSASMGVMKPLLAKLTTLMGDEYKKLKGVRKQVSFL 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,134,615
Number of Sequences: 37544
Number of extensions: 451581
Number of successful extensions: 1560
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1559
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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