Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30024
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.58 
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_51959| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_36955| Best HMM Match : LISCH7 (HMM E-Value=9.8)                    29   4.1  
SB_46189| Best HMM Match : bZIP_2 (HMM E-Value=3.3)                    29   4.1  
SB_24908| Best HMM Match : Transglut_C (HMM E-Value=0.028)             29   4.1  
SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_8304| Best HMM Match : PLAT (HMM E-Value=0)                         28   7.2  
SB_32721| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)                  28   9.5  
SB_22759| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_11401| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 21/91 (23%), Positives = 43/91 (47%)
 Frame = +1

Query: 319 DLHRADCQAHKQKGPSRPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSLLQDH 498
           DLH  + Q  +Q G     + +  + QQ  ++  Q+Q QQ+ L     +  ++QS +++ 
Sbjct: 558 DLHEEEVQHQQQFGLQEQSLGQEQRKQQQQLQQQQQQKQQQQL----QKKQQKQSSMEEK 613

Query: 499 VHRDKQYLKLDNTKGSSDDRIIYGDSTADTF 591
           +  + + + L    GSS +  +    + D F
Sbjct: 614 LSSEIEKMTLATGDGSSKEGSLMDPVSVDEF 644


>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 411 SVTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRQTVPEAR 530
           S++P +   R S GSL P  +T+  TSRS P  ++   AR
Sbjct: 179 SISPASPALRSSLGSLAPTSRTSTPTSRSTPRSRSRSRAR 218


>SB_51959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 241 PWTSPPVMDKGWKGNRQILLPHPV*SDLHRADCQAHKQKGPSR 369
           PWT  P     W  + + L+P P  +DL R     HK++  SR
Sbjct: 46  PWTRGPYK-MAWAFSDENLVPEPTQADLERVRRLRHKRRRRSR 87


>SB_36955| Best HMM Match : LISCH7 (HMM E-Value=9.8)
          Length = 160

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/51 (25%), Positives = 30/51 (58%)
 Frame = +1

Query: 367 RPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSLLQDHVHRDKQY 519
           +  +++  K ++   R L++Q +Q+   E Y  + +Q+ L+ + +HRD Q+
Sbjct: 7   KKDLEQEMKREKELRRRLKQQERQQKR-EAYEAMKRQKKLMAEEMHRDLQF 56


>SB_46189| Best HMM Match : bZIP_2 (HMM E-Value=3.3)
          Length = 445

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 308 GWGSKI*RFP-FHPLSITGGEVHGVPLAVFDQTLHGFLDNLSLLF 177
           G+G  +   P FH +SI+GG   GVP+    Q     ++ L + F
Sbjct: 151 GYGGSLDSMPYFHRVSISGGNTSGVPVEELKQAAKLLVEALFIRF 195


>SB_24908| Best HMM Match : Transglut_C (HMM E-Value=0.028)
          Length = 202

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/57 (36%), Positives = 26/57 (45%)
 Frame = +3

Query: 108 ELYMSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFATSYGQRME 278
           E+   VVIG     I K +    EK+   I   VK  +  G RNT D A    QR+E
Sbjct: 35  EVQSDVVIGSDFNVIVKANNKGSEKRSVDISITVKSAMYTG-RNTHDVAKLLRQRVE 90


>SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +3

Query: 168 YLKEKKGEVIKEAVKRLIENGKRNTMDFATSYGQRME 278
           + +E+ GE   EA KRLI+ GK+  M F    G+R++
Sbjct: 676 FREEEDGESFAEAKKRLIKQGKQQIM-FLLYIGKRIK 711


>SB_8304| Best HMM Match : PLAT (HMM E-Value=0)
          Length = 1182

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +2

Query: 119  ECRHW*IRDRYRQML*ISEGKEGRGYQGSREASDRKRQEEHHGLRHQLWTKDGKEIVK 292
            E RH    +  RQ    ++GK+    +  +EA +R+R E+   ++ Q   KD K+ +K
Sbjct: 911  EERHLREEEEERQRKEAAKGKKEEEEKKEKEAEERRRAEDEERIKKQA-EKDRKKAIK 967


>SB_32721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 637

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 168 YLKEKKGEVIKEAVKRLIENGKRNTMDFATS 260
           ++  KK  +IKEA+KR+++N +R  +   TS
Sbjct: 175 FVDGKKLRMIKEAIKRILKNNRRLKIPKVTS 205


>SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)
          Length = 603

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +1

Query: 325 HRADCQAHKQKGPSRPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSLLQDHVH 504
           H+   Q  + +   + Q  +  K QQ      Q+  QQ+ +  +  +  +QQ LLQ H+ 
Sbjct: 249 HKTQTQNKQSRASKKQQQQQEMKIQQQ----QQQYIQQQQVQHMQQQRLQQQQLLQQHLQ 304

Query: 505 RDKQ 516
           R +Q
Sbjct: 305 RQQQ 308


>SB_22759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +1

Query: 505 RDKQYLKLDNTKGSSDDRIIYGD----STADTFKHHWYLEPSMYESD 633
           RD+Q   + +T    D+R+I GD    S   +  H W+L+  M +SD
Sbjct: 411 RDQQSTHVQHTCEVCDNRVIIGDKNWASHLVSKSHKWHLKKQMKKSD 457


>SB_11401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 439

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +2

Query: 224 KRQEEHHGLRHQLWTKDGKEIVKSYFPIQFRVIFTEQTVKLINKRDHHALKLID 385
           +R +EH   RH+   ++G    +SY  + F     E         +H A+KLID
Sbjct: 274 ERNDEHEEDRHEDNDEEGDIAAESYHSMSFSDYLAEVDRFTDTSTNHVAIKLID 327


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,172,643
Number of Sequences: 59808
Number of extensions: 518847
Number of successful extensions: 1836
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1832
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)