Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30024
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   1.0  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    24   1.3  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    24   1.3  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    24   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.5  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +2

Query: 266 TKDGKEIVKSYFPIQFRVIFTEQTVKLINKRDHHALKLIDQQNHNKIA 409
           T + K+I K   P + ++I     V ++   DH    L+D   +  IA
Sbjct: 124 TMENKDITKRPLPNESQLIKRHPIVTIMGHVDHGKTTLLDALRNTSIA 171


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 147 AIAKCSEYLKEKKGEVIKEAVKRLIEN 227
           A+A   +   +K+ EVIK+ +K L+EN
Sbjct: 71  ALATDCKKCTDKQREVIKKVIKFLVEN 97


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 147 AIAKCSEYLKEKKGEVIKEAVKRLIEN 227
           A+A   +   +K+ EVIK+ +K L+EN
Sbjct: 71  ALATDCKKCTDKQREVIKKVIKFLVEN 97


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 147 AIAKCSEYLKEKKGEVIKEAVKRLIEN 227
           A+A   +   +K+ EVIK+ +K L+EN
Sbjct: 71  ALATDCKKCTDKQREVIKKVIKFLVEN 97


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 382  RPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSLLQDHVHRDKQ 516
            R  + QQ     +Q+Q QQ+   +   +  +QQ   Q H  R+++
Sbjct: 1196 RGLQEQQRNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQHQARERE 1240


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 340 QAHKQKGPSRPQVDRPTKPQQNCIR*LQRQNQQE 441
           Q H+Q+      V    +PQQ   +  Q+Q QQ+
Sbjct: 422 QQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQ 455


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,832
Number of Sequences: 438
Number of extensions: 4646
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)