Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30022
         (759 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    28   0.36 
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    25   2.5  
AB090818-1|BAC57911.1|  285|Anopheles gambiae gag-like protein p...    25   3.3  

>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 27.9 bits (59), Expect = 0.36
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 620 IELDNPNDSWSWNYRHIHGSCM 685
           + L+NP+ +W   +R+IH SC+
Sbjct: 931 VSLENPSVNWRLLWRNIHRSCL 952


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 450 RSRVVDLTLVTLSLINNTSNKLLPIA*SSSH 542
           R   +DLT V+ SL+  T  ++LP   +S H
Sbjct: 171 RKSAIDLTFVSQSLMETTGWEVLPDYMNSDH 201


>AB090818-1|BAC57911.1|  285|Anopheles gambiae gag-like protein
           protein.
          Length = 285

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 208 RQRARQESACEGCAAPRSTPSPASQPRR 125
           R+R +Q  A +  +   +TP  ASQP++
Sbjct: 15  RKRKKQREAEQAASLAANTPPSASQPKQ 42


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 747,834
Number of Sequences: 2352
Number of extensions: 14883
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 78586767
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)