Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30022
         (759 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   5.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   9.5  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 388 LSIHCR*ISSKAYEH 432
           +++HC+ +  K YEH
Sbjct: 45  IALHCQEVGGKNYEH 59


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = +3

Query: 645 RGVGIIDIYMAHVWDVM 695
           +G+ + D Y++  WD++
Sbjct: 202 KGIDLSDFYLSVEWDIL 218


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 97  CQQAPTTRVVLTPCAGCRGQSSITSG 20
           C +A    VVL  C      S+IT+G
Sbjct: 206 CTEATAGAVVLETCQRNSNNSTITAG 231


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 341 GKQ-ALMLIDINNYSYIYQYIVAKSLQRHTNI*LTLLTQQGS 463
           G+Q A  +I    YS +       S  +H+NI   L+ +QG+
Sbjct: 88  GEQVAAKIIQTEKYSNMLNSEKHASFLKHSNIVKVLMIEQGA 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,223
Number of Sequences: 438
Number of extensions: 3707
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)