Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30022
         (759 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40070.1 68415.m04923 expressed protein                             30   1.9  
At2g22300.1 68415.m02646 ethylene-responsive calmodulin-binding ...    28   5.9  
At2g28500.1 68415.m03463 LOB domain protein 11 / lateral organ b...    28   7.7  

>At2g40070.1 68415.m04923 expressed protein
          Length = 607

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
 Frame = -3

Query: 232 SGARLSPSRQRARQESACEGCAAPRSTPS----PASQPRRWCFISFSVPCQQAPTTRVVL 65
           S +RL+P+  +    +A    +  RSTPS     A   R    +S S      PT+R  L
Sbjct: 245 SSSRLTPTASKPTTSTARSAGSVTRSTPSTTTKSAGPSRSTTPLSRSTARSSTPTSRPTL 304

Query: 64  TPCAGCRGQSSITSGPLPSS 5
            P       S+ T  P+ S+
Sbjct: 305 PPSKTISRSSTPTRRPIASA 324


>At2g22300.1 68415.m02646 ethylene-responsive calmodulin-binding
           protein, putative (SR1) identical to partial sequence of
           ethylene-induced calmodulin-binding protein GI:11545505
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF03859: CG-1 domain, PF00612: IQ calmodulin-binding
           motif, and PF00023: Ankyrin repeat
          Length = 1032

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 200 SQTGERVRGLCGAAQHAQPRQPTAE 126
           SQT E + G CG+   A P QP +E
Sbjct: 287 SQTWEEILGNCGSGVEALPLQPNSE 311


>At2g28500.1 68415.m03463 LOB domain protein 11 / lateral organ
           boundaries domain protein 11 (LBD11) identical to
           SP|Q9SK08 LOB domain protein 11 {Arabidopsis thaliana}
          Length = 229

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 163 PRSTPSPASQPRRWCFISFSVPCQQAPTTRVVLTPCAGCR 44
           P ++PSP S P            QQ P   VVL+PCA C+
Sbjct: 24  PVNSPSPTSSPPP------PPSPQQPPQPPVVLSPCAACK 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,090,237
Number of Sequences: 28952
Number of extensions: 299556
Number of successful extensions: 674
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)