Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30021
(374 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc... 45 3e-06
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc... 45 3e-06
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy... 30 0.10
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 29 0.31
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 29 0.31
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 0.73
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 27 0.96
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 25 3.9
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 25 5.1
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 25 5.1
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 24 6.8
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 6.8
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 24 6.8
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 24 6.8
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 24 9.0
>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
S25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 88
Score = 45.2 bits (102), Expect = 3e-06
Identities = 19/46 (41%), Positives = 34/46 (73%)
Frame = +1
Query: 124 LFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELRKK 261
+FDK +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L ++
Sbjct: 21 VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAER 66
Score = 28.7 bits (61), Expect = 0.31
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 255 EKGLIKQVVQHHGQVIYTRA 314
E+G+I++V QH Q IYTRA
Sbjct: 65 ERGVIQKVDQHSKQAIYTRA 84
>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
S25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 45.2 bits (102), Expect = 3e-06
Identities = 19/46 (41%), Positives = 34/46 (73%)
Frame = +1
Query: 124 LFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELRKK 261
+FDK +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L ++
Sbjct: 21 VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAER 66
Score = 27.1 bits (57), Expect = 0.96
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 255 EKGLIKQVVQHHGQVIYTR 311
E+G+I++V QH Q IYTR
Sbjct: 65 ERGVIQKVDQHSKQAIYTR 83
>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 613
Score = 30.3 bits (65), Expect = 0.10
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = -1
Query: 275 LFDETFFLSSMSALLAREPRTFN--LSDTTAGVISLYCGTSLYSFSYVGLSNNT---WLF 111
+F+ F+ S M+ + + FN LSD VIS G + Y F V LS+ T W
Sbjct: 198 VFNAHFYSSIMNEVAEKANAGFNISLSDYWGRVISRTLGDTTYGFPNVSLSSITSQEWYR 257
Query: 110 NLSRTFPLDHF 78
N + +P+ F
Sbjct: 258 NANFPYPIITF 268
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 28.7 bits (61), Expect = 0.31
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -1
Query: 248 SMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFFFL 69
S+SA FNL+ GV ++ G S +F+ + + + W F + P+D FL
Sbjct: 139 SLSADTIGRRWAFNLTFLFTGVFAVIAGASP-NFASICVFDALWSFGVGGNLPVDSAIFL 197
Query: 68 -ALP 60
ALP
Sbjct: 198 EALP 201
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 28.7 bits (61), Expect = 0.31
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 145 HMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPSSSV 32
+M YQ TP HE WT SS L H + PS+ +
Sbjct: 152 YMRAYQLTPEFMAAHEEKTWTASS--LNSHNLTPSNVI 187
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 27.5 bits (58), Expect = 0.73
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 152 SFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 54
SF Y L NN++L +S + ++ F++ PPP
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 27.1 bits (57), Expect = 0.96
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 26 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRC 124
K HR DP+ P RR GP + V + +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 25.0 bits (52), Expect = 3.9
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 185 VISLYCGTSLYSFSYV-GLSNNTWLFNLSRTFPLDHFFFLALPPP 54
V+ + C +L F ++ G+ N T P +F+ L PPP
Sbjct: 37 VVVIICIAALIFFFFIIGIINRRRTKKGQATIPFTNFYPLTAPPP 81
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 24.6 bits (51), Expect = 5.1
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 5 RLRPNSLKKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPHMRN 151
R PNS+K+ +R K P++ +S P+ +T +R + +RN
Sbjct: 150 RTTPNSIKRQKRLFKSPISNCLNPKSDPE---ITQLLSRRLKLEKEVRN 195
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 24.6 bits (51), Expect = 5.1
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -2
Query: 346 IVYATGSSPLVARV*ITCP*CWTTCLMRP 260
I+Y T ++P++ + +T CW L P
Sbjct: 260 ILYKTNNNPIILPITVTVCSCWWLILSTP 288
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 24.2 bits (50), Expect = 6.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 131 SNNTWLFNLSRTFPLDHFFFLAL 63
S N+W+F L TF F+L+L
Sbjct: 316 SRNSWIFTLLLTFTQLTIFYLSL 338
>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 24.2 bits (50), Expect = 6.8
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 73 SWLCRHRILPSSSVFFEAVW 14
+WL + ++PSSS F + W
Sbjct: 131 AWLEKQELVPSSSNFLNSFW 150
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 24.2 bits (50), Expect = 6.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 212 RSEVPWREEHSSSLGKRSHQTGS 280
+S V W EEH+ L KR+ + S
Sbjct: 2213 KSVVCWIEEHNDDLSKRTQELKS 2235
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 24.2 bits (50), Expect = 6.8
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -1
Query: 251 SSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT--WLFNLSRTFP 90
S+ S L+ EP+TF+ S T + IS SL LS++T L + S T P
Sbjct: 946 SASSNTLSTEPKTFSSSSTLSESISSINTNSLTVKPESSLSSSTTSGLTSSSSTIP 1001
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 23.8 bits (49), Expect = 9.0
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 139 TYEKLYKEVPQYKLITPAVVS 201
TY+K+Y E P K++ + S
Sbjct: 96 TYKKIYNEYPPTKILVQEIAS 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,567,139
Number of Sequences: 5004
Number of extensions: 31681
Number of successful extensions: 135
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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