Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30021
(374 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0) 89 1e-18
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.17
SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2) 27 3.7
SB_23138| Best HMM Match : KA1 (HMM E-Value=6.3) 27 5.0
SB_10992| Best HMM Match : KA1 (HMM E-Value=6.3) 27 5.0
SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 27 6.5
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_41467| Best HMM Match : Plasmodium_HRP (HMM E-Value=3.4) 26 8.7
SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3) 26 8.7
>SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)
Length = 115
Score = 89.0 bits (211), Expect = 1e-18
Identities = 41/51 (80%), Positives = 47/51 (92%)
Frame = +1
Query: 109 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELRKK 261
LNN VLFDK TY+KLYKEVP Y+LITP+VVSERLK+RGSLARRAL+EL+ K
Sbjct: 41 LNNLVLFDKATYDKLYKEVPSYRLITPSVVSERLKIRGSLARRALLELQSK 91
Score = 42.7 bits (96), Expect = 9e-05
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +3
Query: 258 KGLIKQVVQHHGQVIYTRATKGDD 329
KGLIK+V +HH Q+IYTRATKG D
Sbjct: 91 KGLIKEVSKHHSQLIYTRATKGAD 114
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 31.9 bits (69), Expect = 0.17
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = -1
Query: 278 YLFDETFFLSSMSALLAREPRTFNLSDT---TAGVISLYCGTSLYSFSYVGLSNNTWLFN 108
+LF +T FLSS S L + TF SDT ++ L T+ S + LS++T L +
Sbjct: 3 FLFSDTTFLSSDSTFLFSD-TTFLSSDTIFLSSDTTLLSSDTTFLSSDTIFLSSDTTLLS 61
Query: 107 LSRTF 93
RTF
Sbjct: 62 SDRTF 66
>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
Length = 1244
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 164 TSLYSFSYVGLSNNTWLFNLSRTFPLDH 81
+SL+ G+SN+ WL N S T P++H
Sbjct: 250 SSLHIEKENGISNDDWLSNPSFTSPIEH 277
>SB_23138| Best HMM Match : KA1 (HMM E-Value=6.3)
Length = 84
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 296 LPMMLDYLFDETFFLSSMSALLAREPRTFNLSD 198
LP + D+L+D ++S +LLA R ++SD
Sbjct: 51 LPSIADFLWDHMAVIASSLSLLAIRARVIDMSD 83
>SB_10992| Best HMM Match : KA1 (HMM E-Value=6.3)
Length = 84
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 296 LPMMLDYLFDETFFLSSMSALLAREPRTFNLSD 198
LP + D+L+D ++S +LLA R ++SD
Sbjct: 51 LPSIADFLWDHMAVIASSLSLLAIRARVIDMSD 83
>SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 594
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 17 NSLKKHRRRRKDPVAAKPRRRSGPK 91
N KH ++K PV P+R GPK
Sbjct: 304 NDKHKHNSKQKTPVVYFPKRPYGPK 328
>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
Length = 2565
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 2 RRLRPNSLKKHRRRRKDPVAAKPRRRSG 85
R+ RP +++RR RK P+ R +SG
Sbjct: 556 RKRRPRLGRRNRRLRKTPIVCTKRGKSG 583
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 2 RRLRPNSLKKHRRRRKDPVAAKPRRR 79
RR P RRRRK P + PRRR
Sbjct: 909 RRDSPTPSPPPRRRRKSPSPSPPRRR 934
>SB_41467| Best HMM Match : Plasmodium_HRP (HMM E-Value=3.4)
Length = 225
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 227 WREEHSSSLGKRSHQTGSPTSWAGDLHACDQGR 325
+R+ H++ G+ H +G+ T+ D H QGR
Sbjct: 44 FRDAHNTLQGRAQHTSGTRTTHFRDAHNTLQGR 76
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 227 WREEHSSSLGKRSHQTGSPTSWAGDLHACDQGR 325
+R+ H++ G+ H +G+ T+ D H QGR
Sbjct: 66 FRDAHNTLQGRAQHTSGTRTTHFRDAHNTLQGR 98
>SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1453
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 14 PNSLKKHRRRRKDPVAAKPRRRSGPKEK 97
PN+LK+ +RR + KP RS K +
Sbjct: 67 PNALKREKRRTTNSANRKPANRSPSKRE 94
>SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)
Length = 325
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 2 RRLRPNSLKKHRRRRKDPVAAKPRRRSGPKEK 97
R L + K HR RR+ +A +PR +GP EK
Sbjct: 190 RNLAGPAEKPHRSRRETQLA-QPRNPTGPAEK 220
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,960,134
Number of Sequences: 59808
Number of extensions: 257818
Number of successful extensions: 735
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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