Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30021
         (374 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   3.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   6.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   8.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   8.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   8.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   8.3  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 137 GLSNNTWLFNLSRTFP 90
           GLS+  W++  S T P
Sbjct: 542 GLSHGNWIYPASMTIP 557


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 44  RKDPVAAKPRRRSGPKEKFVTS*TTRC 124
           R  P++ K   RSG +E+F+     RC
Sbjct: 79  RYQPISYKWITRSGTREQFIDM-VARC 104



 Score = 20.2 bits (40), Expect = 8.3
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -2

Query: 79  SSSWLCRHR 53
           S+ W+C HR
Sbjct: 375 SNGWICEHR 383


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 370 FFFFLTYIIVYATGSS 323
           +F FLT+  ++  G+S
Sbjct: 474 YFMFLTFFFIHYKGTS 489


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 370 FFFFLTYIIVYATGSS 323
           +F FLT+  ++  G+S
Sbjct: 460 YFMFLTFFFIHYKGTS 475


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 370 FFFFLTYIIVYATGSS 323
           +F FLT+  ++  G+S
Sbjct: 494 YFMFLTFFFIHYKGTS 509


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 370 FFFFLTYIIVYATGSS 323
           +F FLT+  ++  G+S
Sbjct: 443 YFMFLTFFFIHYKGTS 458


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,432
Number of Sequences: 438
Number of extensions: 2484
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)