Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30020
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...   108   5e-25
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    27   1.5  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    26   3.5  
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    25   6.2  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    25   6.2  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    25   8.2  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  108 bits (260), Expect = 5e-25
 Identities = 51/94 (54%), Positives = 62/94 (65%), Gaps = 3/94 (3%)
 Frame = +3

Query: 216 PWSSKVHEFRTCGP---MVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIH 386
           P+  K+  F   GP   M+WEG   VKTGR MLGA+NP DS PGTIRGD  I +GRN+ H
Sbjct: 58  PFYEKLVGFMASGPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCH 117

Query: 387 GSDSVESAKKEIGLWFTDKEVVGWTPANENWVYE 488
           GSDS+ESA +EI LWF   E+  +    E W+YE
Sbjct: 118 GSDSIESANREIKLWFQPSEIQVYDRTIEPWIYE 151



 Score = 92.3 bits (219), Expect = 5e-20
 Identities = 41/77 (53%), Positives = 59/77 (76%), Gaps = 2/77 (2%)
 Frame = +1

Query: 46  ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 225
           E+TFI VKPD VQRGL+G II +FE KG+KL  LKF+ PS +L+++HY++   +PF+  L
Sbjct: 4   EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKL 63

Query: 226 VKYMSSGPV--VLWYGR 270
           V +M+SGPV  ++W G+
Sbjct: 64  VGFMASGPVCAMIWEGK 80


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -1

Query: 177 EKFF*WPYE--FQTD*FEAFLFETFNNGAHKTTLYTIRLNHNKSTLTLFRHHEILLTCSI 4
           ++F  W Y+  ++ D     L ET N    K    T+RL H    L+LF    +L TC +
Sbjct: 283 DQFTDWLYQRWYEKDKLIDTLLETGNFPGPKKLHTTVRLKHRLEILSLF---SVLFTCIV 339


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 131 KPFFSKRSIMVPTRPRCTPSGLT 63
           KPF +KRS ++P RP  T   L+
Sbjct: 512 KPFVNKRSKVLPLRPSVTHDNLS 534


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -2

Query: 449 NFFVRKPEAYFLFSRFNAVRTMDDVTPNLNAEITADSAGLRVSWVSC-AKHLTASLHNIK 273
           N FV  P       R +  RT+   TP+L  E  ++    R+S V C   H  +S  N  
Sbjct: 5   NTFVDYPTTQVRKERVHTYRTLTSATPSL--EFFSNENTNRLSEVQCKLTHFLSSSENSS 62

Query: 272 ALPYHRT 252
           ++   RT
Sbjct: 63  SVRNTRT 69


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
 Frame = +3

Query: 270 GLNVVKTGRQMLGATNPADSQP--GTIRGDLCIQVGR--NIIH 386
           GL +++ G ++   T+P+      GT+ GD C+++G   NI+H
Sbjct: 364 GLGLLQ-GIEIASCTDPSKPSDFLGTVIGDKCLELGMNCNIVH 405


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -2

Query: 500 KINLLINPVFICRCPAHNFFVRKPEAYFLFSRFNAVRTMDDVTPNLN 360
           +I L    + ICR P  +FFV   E   L  +   +  +  +T + N
Sbjct: 10  RIQLSSRAIQICRIPKVSFFVVLTETEILIYQIRPLTLISKITKSQN 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,425,222
Number of Sequences: 5004
Number of extensions: 50277
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)