Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30020
         (588 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical p...   111   3e-25
AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical ...    42   4e-04
AC025721-13|AAR85897.1|  139|Caenorhabditis elegans Hypothetical...    33   0.20 
L14710-6|AAA28079.1|  227|Caenorhabditis elegans Hypothetical pr...    27   7.5  

>Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical
           protein F25H2.5 protein.
          Length = 153

 Score =  111 bits (268), Expect = 3e-25
 Identities = 53/95 (55%), Positives = 67/95 (70%), Gaps = 4/95 (4%)
 Frame = +3

Query: 216 PWSSKVHEFRTCGP---MVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIH 386
           P+   + E+ + GP   MVW+GL+VVK GR MLGATNP  S PGTIRGD CIQ GRNI H
Sbjct: 59  PFFPSLIEYMSSGPVVAMVWQGLDVVKQGRSMLGATNPLASAPGTIRGDFCIQTGRNICH 118

Query: 387 GSDSVESAKKEIGLWFTDKEVVGW-TPANENWVYE 488
           GSD+V+SA +EI  WF  +E+  + +P   +WVYE
Sbjct: 119 GSDAVDSANREIAHWFKQEEINDYASPFINSWVYE 153



 Score =  101 bits (241), Expect = 5e-22
 Identities = 47/76 (61%), Positives = 58/76 (76%), Gaps = 2/76 (2%)
 Frame = +1

Query: 46  ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 225
           ERTFI +KPDGV RGLVG II RFE++G+KLV LK +  S+  L+ HY DL  +PFFP L
Sbjct: 5   ERTFIAIKPDGVHRGLVGKIIARFEERGYKLVALKQMTASKAHLEVHYQDLKDKPFFPSL 64

Query: 226 VKYMSSGPVV--LWYG 267
           ++YMSSGPVV  +W G
Sbjct: 65  IEYMSSGPVVAMVWQG 80


>AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical
           protein F55A3.6 protein.
          Length = 118

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
 Frame = +3

Query: 216 PWSSKVHEFRTCGP---MVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIH 386
           P+   + ++ + GP   M+WEG +VVK  R +LG       +  +I  DL ++      H
Sbjct: 34  PFFPLLIDYMSSGPVVAMLWEGCDVVKRARVILGEELEV-GEFRSIFYDLVVRDTHKGCH 92

Query: 387 GSDSVESAKKEIGLWFTD 440
            SDSV SA +E  LWF +
Sbjct: 93  CSDSVASANREYVLWFEE 110



 Score = 35.1 bits (77), Expect = 0.037
 Identities = 16/23 (69%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = +1

Query: 205 RPFFPGLVKYMSSGPVV--LWYG 267
           +PFFP L+ YMSSGPVV  LW G
Sbjct: 33  KPFFPLLIDYMSSGPVVAMLWEG 55


>AC025721-13|AAR85897.1|  139|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.15 protein.
          Length = 139

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +1

Query: 58  IMVKPDGV-QRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGLVKY 234
           +++KP+ V  R L    +      G ++  ++ +  S  L +Q Y+    + F+  LV++
Sbjct: 14  VVLKPEIVAHRVLAQVALSELRSNGIEIEEMRQMKISGSLAKQLYAQHQGKFFYDRLVRH 73

Query: 235 MSSGPVV 255
           +SSGPV+
Sbjct: 74  ISSGPVI 80


>L14710-6|AAA28079.1|  227|Caenorhabditis elegans Hypothetical
           protein K02D10.4 protein.
          Length = 227

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 93  CGHHY*TFRKERLQTSRFEIRMAIRRTSP 179
           CGH        R +T +FE R+ ++R+SP
Sbjct: 107 CGHPVEVDDHHRRETKKFENRLTLKRSSP 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,576,503
Number of Sequences: 27780
Number of extensions: 291369
Number of successful extensions: 847
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)