Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30020
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    26   0.24 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   1.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.7  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   3.9  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   3.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   6.8  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   6.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.0  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 186 LQRFGIPAFLPWSSKVHEFRTCGPMVWEGLNVV 284
           L   G P  +  S+ V  F+  GP  W G+ VV
Sbjct: 537 LSLLGGPLVMVCSAPVWRFQPWGPFTWGGIGVV 569


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 569 YENVSFNHRMFNINYENKTK 510
           Y N ++N+  +N NY N  K
Sbjct: 333 YNNNNYNNNNYNNNYNNNCK 352


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
 Frame = +3

Query: 396  SVESAKKEIGLW-------FTDKEVVGWTPANENWVYE*IYFNL 506
            +VE+AK    +W        TD+    WT  NE +V   +Y NL
Sbjct: 1082 NVETAKTNEEMWELIDTEKLTDRLPYPWTMDNERYVKVDMYMNL 1125


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 563 NVSFNHRMFNINYENKTKLQIKINLLIN 480
           N ++N+  +  NY N  K     N +IN
Sbjct: 321 NYNYNNNNYKYNYNNYNKKLYYKNYIIN 348


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 81  YTIRLNHNKSTLTLFRHHEILLTCSI 4
           Y +  + +K T T+  +H I L CS+
Sbjct: 61  YPLPYSGSKCTWTITSYHRINLKCSL 86


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -3

Query: 439 SVNQRPISFLADSTLSEPW 383
           S+N+  ++++AD  L++ W
Sbjct: 43  SINEESMTYVADIFLAQSW 61


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 48  LTLFRHHEILLTCSIN 1
           L + +HH  +  CS+N
Sbjct: 123 LQMTKHHNFIKVCSVN 138


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +3

Query: 270  GLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRN 377
            G  +V +G+Q  G      +QP T++  +  +  +N
Sbjct: 920  GSGIVASGQQHAGGWQSIYAQPQTVQDQIVSEYYQN 955


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,557
Number of Sequences: 438
Number of extensions: 3701
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)