Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30020
(588 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g09320.1 68417.m01542 nucleoside diphosphate kinase 1 (NDK1) ... 114 4e-26
At4g11010.1 68417.m01790 nucleoside diphosphate kinase 3, mitoch... 109 1e-24
At4g23900.1 68417.m03438 nucleoside diphosphate kinase 4 (NDK4) ... 108 3e-24
At5g63310.1 68418.m07945 nucleotide diphosphate kinase II, chlor... 105 2e-23
At1g17410.1 68414.m02126 nucleoside diphosphate kinase family pr... 55 4e-08
At5g67430.1 68418.m08502 GCN5-related N-acetyltransferase (GNAT)... 30 1.3
At2g34040.2 68415.m04168 apoptosis inhibitory 5 (API5) family pr... 29 3.0
At2g34040.1 68415.m04167 apoptosis inhibitory 5 (API5) family pr... 29 3.0
At4g22980.1 68417.m03316 expressed protein ; expression supporte... 28 4.0
At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR... 28 5.3
At1g60790.1 68414.m06843 expressed protein 27 7.0
At5g15540.1 68418.m01819 expressed protein low similarity to DNA... 27 9.3
>At4g09320.1 68417.m01542 nucleoside diphosphate kinase 1 (NDK1)
identical to identical to Nucleoside diphosphate kinase
I (NDK I) (NDP kinase I) (NDPK I) (SP:P39207)
[Arabidopsis thaliana]; contains Pfam PF00334 :
Nucleoside diphosphate kinase domain;
Length = 169
Score = 114 bits (275), Expect = 4e-26
Identities = 51/77 (66%), Positives = 60/77 (77%)
Frame = +3
Query: 258 MVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVESAKKEIGLWFT 437
M+WEG NVV TGR+++GATNPA S+PGTIRGD I +GRN+IHGSDSVESA+KEI LWF
Sbjct: 93 MIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSVESARKEIALWFP 152
Query: 438 DKEVVGWTPANENWVYE 488
D V W + WVYE
Sbjct: 153 DGP-VNWQSSVHPWVYE 168
Score = 99 bits (238), Expect = 1e-21
Identities = 46/81 (56%), Positives = 60/81 (74%), Gaps = 2/81 (2%)
Frame = +1
Query: 46 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 225
E+TFIM+KPDGVQRGL+G +I RFEKKGF L GLK + ++HY DL+S+ FF GL
Sbjct: 22 EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGL 81
Query: 226 VKYMSSGPVV--LWYGRALML 282
V Y+ SGPVV +W G+ ++L
Sbjct: 82 VDYIVSGPVVAMIWEGKNVVL 102
>At4g11010.1 68417.m01790 nucleoside diphosphate kinase 3,
mitochondrial (NDK3) identical to Nucleoside diphosphate
kinase III, mitochondrial precursor (NDK III) (NDP
kinase III) (NDPK III) (SP:O49203) [Arabidopsis
thaliana]; contains Pfam PF00334 : Nucleoside
diphosphate kinase domain;
Length = 238
Score = 109 bits (262), Expect = 1e-24
Identities = 49/93 (52%), Positives = 68/93 (73%), Gaps = 3/93 (3%)
Frame = +3
Query: 216 PWSSKVHEFRTCGP---MVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIH 386
P+ + + +F + GP MVWEG V++ GR+++GAT+P S+PGTIRGDL + VGRNIIH
Sbjct: 143 PFFNGLCDFLSSGPVIAMVWEGDGVIRYGRKLIGATDPQKSEPGTIRGDLAVTVGRNIIH 202
Query: 387 GSDSVESAKKEIGLWFTDKEVVGWTPANENWVY 485
GSD E+AK EI LWF +E+V +T +E W+Y
Sbjct: 203 GSDGPETAKDEISLWFKPQELVSYTSNSEKWLY 235
Score = 108 bits (260), Expect = 2e-24
Identities = 48/82 (58%), Positives = 63/82 (76%), Gaps = 2/82 (2%)
Frame = +1
Query: 28 MMAEQRERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASR 207
++A + ERTFI +KPDGVQRGL+ II RFE+KGFKLVG+K + PS++ Q+HY DL R
Sbjct: 83 VLAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVIVPSKDFAQKHYHDLKER 142
Query: 208 PFFPGLVKYMSSGPVV--LWYG 267
PFF GL ++SSGPV+ +W G
Sbjct: 143 PFFNGLCDFLSSGPVIAMVWEG 164
>At4g23900.1 68417.m03438 nucleoside diphosphate kinase 4 (NDK4)
contains Pfam PF00334 : Nucleoside diphosphate kinase
domain; identical to nucleoside diphosphate kinase 4
(GI:11990430) [Arabidopsis thaliana]
Length = 237
Score = 108 bits (259), Expect = 3e-24
Identities = 49/93 (52%), Positives = 66/93 (70%), Gaps = 3/93 (3%)
Frame = +3
Query: 216 PWSSKVHEFRTCGP---MVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIH 386
P+ + + F + GP MVWEG V++ GR+++GAT+P S+PGTIRGDL + VGRNIIH
Sbjct: 142 PFFNGLCNFLSSGPVVAMVWEGEGVIRYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIH 201
Query: 387 GSDSVESAKKEIGLWFTDKEVVGWTPANENWVY 485
GSD E+AK EI LWF +E+V +T E W+Y
Sbjct: 202 GSDGPETAKDEISLWFKPEELVSYTSNAEKWIY 234
Score = 105 bits (253), Expect = 2e-23
Identities = 48/85 (56%), Positives = 63/85 (74%), Gaps = 2/85 (2%)
Frame = +1
Query: 31 MAEQRERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRP 210
+A + ERTFI +KPDGVQRGL+ II RFE+KG+KLVG+K + PS+ Q+HY DL RP
Sbjct: 83 LAAEMERTFIAIKPDGVQRGLISEIITRFERKGYKLVGIKVMVPSKGFAQKHYHDLKERP 142
Query: 211 FFPGLVKYMSSGPVV--LWYGRALM 279
FF GL ++SSGPVV +W G ++
Sbjct: 143 FFNGLCNFLSSGPVVAMVWEGEGVI 167
>At5g63310.1 68418.m07945 nucleotide diphosphate kinase II,
chloroplast (NDPK2) identical to SP|O64903 Nucleoside
diphosphate kinase II, chloroplast precursor (NDK II)
(NDP kinase II) (NDPK II) (NDPK Ia) [Arabidopsis
thaliana]; contains Pfam PF00334 : Nucleoside
diphosphate kinase domain; contains Pfam profile
PF00334: Nucleoside diphosphate kinase
Length = 231
Score = 105 bits (253), Expect = 2e-23
Identities = 48/79 (60%), Positives = 61/79 (77%), Gaps = 2/79 (2%)
Frame = +1
Query: 37 EQRERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFF 216
E E T+IMVKPDG+QRGLVG II RFEKKGFKL+GLK +EL ++HY DL+++ FF
Sbjct: 81 EDVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFF 140
Query: 217 PGLVKYMSSGPVV--LWYG 267
P L++Y++SGPVV W G
Sbjct: 141 PNLIEYITSGPVVCMAWEG 159
Score = 104 bits (249), Expect = 5e-23
Identities = 45/87 (51%), Positives = 62/87 (71%), Gaps = 3/87 (3%)
Frame = +3
Query: 237 EFRTCGPMV---WEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVES 407
E+ T GP+V WEG+ VV + R+++G T+P ++PGTIRGDL +Q GRNI+HGSDS E+
Sbjct: 145 EYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPEN 204
Query: 408 AKKEIGLWFTDKEVVGWTPANENWVYE 488
K+EIGLWF + E+ W A W+ E
Sbjct: 205 GKREIGLWFKEGELCKWDSALATWLRE 231
>At1g17410.1 68414.m02126 nucleoside diphosphate kinase family
protein contains Pfam PF00334 : Nucleoside diphosphate
kinase domain; similar to Nucleoside diphosphate kinase
homolog 5 (NDK-H 5) (NDP kinase homolog 5) (nm23-H5)
(Testis-specific nm23 homolog) (Inhibitor of p53-induced
apoptosis-beta) (IPIA-beta) (SP:P56597) {Homo sapiens}
Length = 181
Score = 54.8 bits (126), Expect = 4e-08
Identities = 29/75 (38%), Positives = 38/75 (50%)
Frame = +1
Query: 34 AEQRERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPF 213
A ERT M+KPDGV I + GF +V +E Y + +SR F
Sbjct: 29 ASSEERTLAMIKPDGVSGNYTEEIKTIVVEAGFNIVKEMLTQLDKETASAFYEEHSSRSF 88
Query: 214 FPGLVKYMSSGPVVL 258
FP LV YM+SGPV++
Sbjct: 89 FPHLVTYMTSGPVLV 103
Score = 41.5 bits (93), Expect = 4e-04
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Frame = +3
Query: 240 FRTCGP---MVWEGLNVVKTGRQMLGATNPAD---SQPGTIRGDLCIQVGRNIIHGSDSV 401
+ T GP MV E N V R ++G T+ S P +IR +N +HGSDS
Sbjct: 95 YMTSGPVLVMVLEKRNAVSDWRDLIGPTDAEKAKISHPHSIRALCGKNSQKNCVHGSDST 154
Query: 402 ESAKKEIGLWFTD 440
SA++EI +F D
Sbjct: 155 SSAEREIKFFFKD 167
>At5g67430.1 68418.m08502 GCN5-related N-acetyltransferase (GNAT)
family protein contains Pfam profile PF00583:
acetyltransferase, GNAT family
Length = 386
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2
Query: 401 NAVRTMDDVTPNLNAEITADSAGLRVS 321
NA+R DDV+P +N A +GLRVS
Sbjct: 79 NALRQADDVSPEINTTKLAFVSGLRVS 105
>At2g34040.2 68415.m04168 apoptosis inhibitory 5 (API5) family
protein contains Pfam domain PF05918 Apoptosis
inhibitory protein 5 (API5)
Length = 442
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -3
Query: 475 FSFAGVQPTTSLSVNQRPISFLADSTLSEPWMMLRP 368
F+ AGV PTT + ++ ++F+ D + +L+P
Sbjct: 146 FTHAGVTPTTDDQIREKVLNFIRDKVIPLKGELLKP 181
>At2g34040.1 68415.m04167 apoptosis inhibitory 5 (API5) family
protein contains Pfam domain PF05918 Apoptosis
inhibitory protein 5 (API5)
Length = 553
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -3
Query: 475 FSFAGVQPTTSLSVNQRPISFLADSTLSEPWMMLRP 368
F+ AGV PTT + ++ ++F+ D + +L+P
Sbjct: 146 FTHAGVTPTTDDQIREKVLNFIRDKVIPLKGELLKP 181
>At4g22980.1 68417.m03316 expressed protein ; expression supported
by MPSS
Length = 559
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 94 VGTIIERFEKKGFKLVGLKFVWPSEELLQQ 183
V +I EKKG K +F WPS E+L +
Sbjct: 205 VEEMIRISEKKGIKPQSAEFSWPSTEILSE 234
>At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1017
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -1
Query: 159 PYEFQTD*FEAFLFETFNN-GAHKTTLYTIRLNHNKSTLTLFRHHEILLTCSI 4
P F + ++ +F +F+ KT L IRL N++ +T+F +I+ + +I
Sbjct: 4 PSSFSSQNYKFNVFASFHGPDVRKTLLSHIRLQFNRNGITMFDDQKIVRSATI 56
>At1g60790.1 68414.m06843 expressed protein
Length = 541
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -1
Query: 126 FLFETFNNGAHKTTLYTIRLNHNKSTLTLFRHHEILL 16
F+ E+ G + TTL T+RL+ T +++R +IL+
Sbjct: 324 FVRESSFKGVNGTTLETLRLDMMDKTTSMYRDADILI 360
>At5g15540.1 68418.m01819 expressed protein low similarity to DNA
repair and meiosis protein Rad9 [Coprinus cinereus]
GI:1353390, SP|Q09725 Sister chromatid cohesion protein
mis4 {Schizosaccharomyces pombe}
Length = 1755
Score = 27.1 bits (57), Expect = 9.3
Identities = 21/65 (32%), Positives = 28/65 (43%)
Frame = +1
Query: 118 EKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGLVKYMSSGPVVLWYGRALML*RLAV 297
EKK ++VGL P+++LL + FFP K PV L R L
Sbjct: 942 EKKTKQMVGLLSRTPNQQLLVTIIKRALALDFFPQAAKAAGINPVALASVRRRC--ELMC 999
Query: 298 KCLAQ 312
KCL +
Sbjct: 1000 KCLLE 1004
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,766,516
Number of Sequences: 28952
Number of extensions: 270981
Number of successful extensions: 703
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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