Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30019
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc...    93   2e-20
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa...    93   2e-20
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    26   3.4  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   6.0  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   7.9  

>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 93.5 bits (222), Expect = 2e-20
 Identities = 42/55 (76%), Positives = 47/55 (85%)
 Frame = +3

Query: 102 LGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDKRHP 266
           +GPQ   GE VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRD+  P
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSP 59



 Score = 69.3 bits (162), Expect = 4e-13
 Identities = 34/65 (52%), Positives = 40/65 (61%)
 Frame = +2

Query: 287 QDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSD 466
           QD A KCK +GITALHIK+RA            AQ          M+IGRIEDVTP+P+D
Sbjct: 67  QDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIPTD 126

Query: 467 STRRR 481
           STRR+
Sbjct: 127 STRRK 131


>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 93.5 bits (222), Expect = 2e-20
 Identities = 42/55 (76%), Positives = 47/55 (85%)
 Frame = +3

Query: 102 LGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDKRHP 266
           +GPQ   GE VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRD+  P
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSP 59



 Score = 69.3 bits (162), Expect = 4e-13
 Identities = 34/65 (52%), Positives = 40/65 (61%)
 Frame = +2

Query: 287 QDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSD 466
           QD A KCK +GITALHIK+RA            AQ          M+IGRIEDVTP+P+D
Sbjct: 67  QDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIPTD 126

Query: 467 STRRR 481
           STRR+
Sbjct: 127 STRRK 131


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 112 WGPRVTWTSSLATLFFL 62
           +GPR+ WTSS ++L F+
Sbjct: 304 FGPRIFWTSSQSSLMFV 320


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +2

Query: 176 RSCY*FIRP--GNYRPCHWWHEGE 241
           RSC+  +R    N++ C WW EG+
Sbjct: 347 RSCHSALRSIFTNFKGCTWWIEGD 370


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -3

Query: 415 TSKSPKCRLSTRTRGLCFVSTSSTE----LYVQGRYAKSFAFLCYILCR 281
           +SK     L++R   +   S+SSTE    L+  GR++ + + L Y LC+
Sbjct: 23  SSKDAATSLASRVLTIAKGSSSSTEFSNALHTFGRFSDNDSVLIYDLCK 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,383
Number of Sequences: 5004
Number of extensions: 42312
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)