Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30019
(576 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M13934-2|AAB59505.1| 151|Homo sapiens ribosomal protein S14 pro... 114 2e-25
BC091474-1|AAH91474.1| 151|Homo sapiens ribosomal protein S14 p... 114 2e-25
BC020515-1|AAH20515.1| 151|Homo sapiens ribosomal protein S14 p... 114 2e-25
BC006784-1|AAH06784.1| 151|Homo sapiens ribosomal protein S14 p... 114 2e-25
BC003401-1|AAH03401.1| 151|Homo sapiens ribosomal protein S14 p... 114 2e-25
BC001126-1|AAH01126.1| 151|Homo sapiens ribosomal protein S14 p... 114 2e-25
BC072682-1|AAH72682.1| 170|Homo sapiens similar to ribosomal pr... 109 5e-24
>M13934-2|AAB59505.1| 151|Homo sapiens ribosomal protein S14
protein.
Length = 151
Score = 114 bits (274), Expect = 2e-25
Identities = 54/71 (76%), Positives = 58/71 (81%)
Frame = +3
Query: 54 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 233
MAPRK K KEE ++LGPQ GE VFGV HIFASFNDTFVHVTDLSG+ETI RVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 234 KVKADRDKRHP 266
KVKADRD+ P
Sbjct: 61 KVKADRDESSP 71
Score = 75.4 bits (177), Expect = 1e-13
Identities = 38/65 (58%), Positives = 42/65 (64%)
Frame = +2
Query: 287 QDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSD 466
QDVA++CK LGITALHIKLRA AQ MKIGRIEDVTP+PSD
Sbjct: 79 QDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSD 138
Query: 467 STRRR 481
STRR+
Sbjct: 139 STRRK 143
>BC091474-1|AAH91474.1| 151|Homo sapiens ribosomal protein S14
protein.
Length = 151
Score = 114 bits (274), Expect = 2e-25
Identities = 54/71 (76%), Positives = 58/71 (81%)
Frame = +3
Query: 54 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 233
MAPRK K KEE ++LGPQ GE VFGV HIFASFNDTFVHVTDLSG+ETI RVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 234 KVKADRDKRHP 266
KVKADRD+ P
Sbjct: 61 KVKADRDESSP 71
Score = 75.4 bits (177), Expect = 1e-13
Identities = 38/65 (58%), Positives = 42/65 (64%)
Frame = +2
Query: 287 QDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSD 466
QDVA++CK LGITALHIKLRA AQ MKIGRIEDVTP+PSD
Sbjct: 79 QDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSD 138
Query: 467 STRRR 481
STRR+
Sbjct: 139 STRRK 143
>BC020515-1|AAH20515.1| 151|Homo sapiens ribosomal protein S14
protein.
Length = 151
Score = 114 bits (274), Expect = 2e-25
Identities = 54/71 (76%), Positives = 58/71 (81%)
Frame = +3
Query: 54 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 233
MAPRK K KEE ++LGPQ GE VFGV HIFASFNDTFVHVTDLSG+ETI RVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 234 KVKADRDKRHP 266
KVKADRD+ P
Sbjct: 61 KVKADRDESSP 71
Score = 75.4 bits (177), Expect = 1e-13
Identities = 38/65 (58%), Positives = 42/65 (64%)
Frame = +2
Query: 287 QDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSD 466
QDVA++CK LGITALHIKLRA AQ MKIGRIEDVTP+PSD
Sbjct: 79 QDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSD 138
Query: 467 STRRR 481
STRR+
Sbjct: 139 STRRK 143
>BC006784-1|AAH06784.1| 151|Homo sapiens ribosomal protein S14
protein.
Length = 151
Score = 114 bits (274), Expect = 2e-25
Identities = 54/71 (76%), Positives = 58/71 (81%)
Frame = +3
Query: 54 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 233
MAPRK K KEE ++LGPQ GE VFGV HIFASFNDTFVHVTDLSG+ETI RVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 234 KVKADRDKRHP 266
KVKADRD+ P
Sbjct: 61 KVKADRDESSP 71
Score = 75.4 bits (177), Expect = 1e-13
Identities = 38/65 (58%), Positives = 42/65 (64%)
Frame = +2
Query: 287 QDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSD 466
QDVA++CK LGITALHIKLRA AQ MKIGRIEDVTP+PSD
Sbjct: 79 QDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSD 138
Query: 467 STRRR 481
STRR+
Sbjct: 139 STRRK 143
>BC003401-1|AAH03401.1| 151|Homo sapiens ribosomal protein S14
protein.
Length = 151
Score = 114 bits (274), Expect = 2e-25
Identities = 54/71 (76%), Positives = 58/71 (81%)
Frame = +3
Query: 54 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 233
MAPRK K KEE ++LGPQ GE VFGV HIFASFNDTFVHVTDLSG+ETI RVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 234 KVKADRDKRHP 266
KVKADRD+ P
Sbjct: 61 KVKADRDESSP 71
Score = 75.4 bits (177), Expect = 1e-13
Identities = 38/65 (58%), Positives = 42/65 (64%)
Frame = +2
Query: 287 QDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSD 466
QDVA++CK LGITALHIKLRA AQ MKIGRIEDVTP+PSD
Sbjct: 79 QDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSD 138
Query: 467 STRRR 481
STRR+
Sbjct: 139 STRRK 143
>BC001126-1|AAH01126.1| 151|Homo sapiens ribosomal protein S14
protein.
Length = 151
Score = 114 bits (274), Expect = 2e-25
Identities = 54/71 (76%), Positives = 58/71 (81%)
Frame = +3
Query: 54 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 233
MAPRK K KEE ++LGPQ GE VFGV HIFASFNDTFVHVTDLSG+ETI RVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 234 KVKADRDKRHP 266
KVKADRD+ P
Sbjct: 61 KVKADRDESSP 71
Score = 75.4 bits (177), Expect = 1e-13
Identities = 38/65 (58%), Positives = 42/65 (64%)
Frame = +2
Query: 287 QDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSD 466
QDVA++CK LGITALHIKLRA AQ MKIGRIEDVTP+PSD
Sbjct: 79 QDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSD 138
Query: 467 STRRR 481
STRR+
Sbjct: 139 STRRK 143
>BC072682-1|AAH72682.1| 170|Homo sapiens similar to ribosomal
protein S14 protein.
Length = 170
Score = 109 bits (263), Expect = 5e-24
Identities = 52/71 (73%), Positives = 56/71 (78%)
Frame = +3
Query: 54 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 233
MAP K K KEE + LGPQ GE VFGV HIFASFNDTFVHVTDLSG++TI RVTGGM
Sbjct: 1 MAPGKGKEKKEEQVINLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKQTICRVTGGM 60
Query: 234 KVKADRDKRHP 266
KVKADRD+ P
Sbjct: 61 KVKADRDESSP 71
Score = 68.9 bits (161), Expect = 1e-11
Identities = 37/73 (50%), Positives = 42/73 (57%)
Frame = +2
Query: 287 QDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSD 466
QDVA++CK LGI ALHI+LRA AQ MKIGRIEDVTP+PSD
Sbjct: 79 QDVAQRCKELGIIALHIQLRATGGNRTKTLGPGAQSALRALACSGMKIGRIEDVTPIPSD 138
Query: 467 STRRRVAEEDAGC 505
ST R+ A C
Sbjct: 139 STLRKGVTVVAVC 151
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,224,630
Number of Sequences: 237096
Number of extensions: 1830530
Number of successful extensions: 4509
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4503
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5929224630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -