Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30019
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...   109   1e-24
M77697-7|AAA27902.6|  903|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z49911-5|CAA90128.1|  431|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin...    27   9.5  

>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score =  109 bits (263), Expect = 1e-24
 Identities = 52/72 (72%), Positives = 59/72 (81%), Gaps = 1/72 (1%)
 Frame = +3

Query: 54  MAP-RKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGG 230
           MAP RK K  +E+  V+LGPQ   GE +FGVAHIFASFNDTFVH+TD+SGRETI RVTGG
Sbjct: 1   MAPARKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGG 60

Query: 231 MKVKADRDKRHP 266
           MKVKADRD+  P
Sbjct: 61  MKVKADRDESSP 72



 Score = 71.3 bits (167), Expect = 4e-13
 Identities = 36/65 (55%), Positives = 40/65 (61%)
 Frame = +2

Query: 287 QDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSD 466
           QDVA++CK LGI ALHIKLRA            AQ          MKIGRIEDVTP+PSD
Sbjct: 80  QDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPSD 139

Query: 467 STRRR 481
            TRR+
Sbjct: 140 CTRRK 144


>M77697-7|AAA27902.6|  903|Caenorhabditis elegans Hypothetical
           protein B0303.11 protein.
          Length = 903

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
 Frame = -3

Query: 406 SPKCRLSTRTRGLCFVSTSSTE----LYVQGRYAKSFAFLCYILCRQHSSVG*RLSRSAF 239
           SP   LS      CF+++  T     L++   +A S+  L YI+ R+ +  G    +S +
Sbjct: 397 SPPTLLSLAISAACFIASLYTNRHLALFIASIFAISYCSLLYIIRRERNEDGEECPKSMY 456

Query: 238 TFMPPVTRAIVSRPD 194
           + +      +   PD
Sbjct: 457 SSVLEQMHELQQEPD 471


>Z49911-5|CAA90128.1|  431|Caenorhabditis elegans Hypothetical
           protein M28.6 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +3

Query: 108 PQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMK 236
           P H  G T FG  H   + +   + +TDL  R TIA VT G+K
Sbjct: 365 PIHRAG-TQFGFGH---TGHGCQMVITDLKNRVTIAYVTNGLK 403


>AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin
           protein 73 protein.
          Length = 577

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +1

Query: 292 CSREMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGSC-SFKYED 429
           C+R+    W N +A      WWK+N +  S     T   C SF + D
Sbjct: 492 CTRDKIFEWMNNVATDFRSEWWKKNNNLHSPNPSGTGQRCLSFAFGD 538


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,561,673
Number of Sequences: 27780
Number of extensions: 264718
Number of successful extensions: 735
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)