Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30017
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    22   3.8  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   6.6  

>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +1

Query: 418 ILQFISFTLIT*LAMSKN---VLNDYIYIIVNEILLETKFSIDIT 543
           ++  I+ T +T L + +    V+ND I  ++N+    T+F  ++T
Sbjct: 181 VVNTINLTFLTLLMILEGRFRVINDGIQALINDSRKVTRFPTELT 225


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 591 DLLSNSVPIKNLLKHLRNIYRK 526
           DLL  S  +   L+HLR ++ K
Sbjct: 460 DLLVASETLNEHLEHLRQVFEK 481


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,436
Number of Sequences: 336
Number of extensions: 2749
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)