Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30016
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    25   0.94 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   0.94 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.94 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.2  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    24   1.6  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    24   1.6  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    24   1.6  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   2.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.2  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    23   2.9  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.8  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   5.0  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.8  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 7/25 (28%), Positives = 20/25 (80%)
 Frame = -2

Query: 409 TRHYLTVVN*EGYREYILSMVLESS 335
           +++Y+T+++  G+R++I +M+  +S
Sbjct: 10  SKYYVTIIDAPGHRDFIKNMITGTS 34


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 7/25 (28%), Positives = 20/25 (80%)
 Frame = -2

Query: 409 TRHYLTVVN*EGYREYILSMVLESS 335
           +++Y+T+++  G+R++I +M+  +S
Sbjct: 26  SKYYVTIIDAPGHRDFIKNMITGTS 50


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 7/25 (28%), Positives = 20/25 (80%)
 Frame = -2

Query: 409 TRHYLTVVN*EGYREYILSMVLESS 335
           +++Y+T+++  G+R++I +M+  +S
Sbjct: 83  SKYYVTIIDAPGHRDFIKNMITGTS 107


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/24 (29%), Positives = 19/24 (79%)
 Frame = -2

Query: 406 RHYLTVVN*EGYREYILSMVLESS 335
           ++Y+T+++  G+R++I +M+  +S
Sbjct: 84  KYYVTIIDAPGHRDFIKNMITGTS 107


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = +3

Query: 132 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDVVLLVTVITHFPVLGTRLC 302
           I+SS  +KT+     +K   + NNY    K+LY + ++I  + + V V  ++     R  
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPIPVPV--YYGNFPPRPM 138

Query: 303 VCGISLQARLP 335
              IS+Q ++P
Sbjct: 139 GPWISMQEQIP 149


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = +3

Query: 132 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDVVLLVTVITHFPVLGTRLC 302
           I+SS  +KT+     +K   + NNY    K+LY + ++I  + + V V  ++     R  
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPIPVPV--YYGNFPPRPM 138

Query: 303 VCGISLQARLP 335
              IS+Q ++P
Sbjct: 139 GPWISMQEQIP 149


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = +3

Query: 132 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDVVLLVTVITHFPVLGTRLC 302
           I+SS  +KT+     +K   + NNY    K+LY + ++I  + + V V  ++     R  
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPIPVPV--YYGNFPPRPM 138

Query: 303 VCGISLQARLP 335
              IS+Q ++P
Sbjct: 139 GPWISMQEQIP 149


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 189 NNYGIPQKRLYGHSHFISDVVLLVTVITHFPVLGTRLCVCGISLQARLP 335
           NNY    K+LY + ++I  + + V V  +      R     IS+Q ++P
Sbjct: 342 NNYNNNYKKLYYNINYIEQIPVPVPVPIYCGNFPPRSMEPWISMQEQIP 390


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 519 MIGWNLTHDTQSLCPSSWMVY 457
           ++GWN+  +     P  W+VY
Sbjct: 20  LLGWNVPAEELIHIPEHWLVY 40


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 189 NNYGIPQKRLYGHSHFISDVVLLVTVITHFPVLGTRLCVCGISLQARLP 335
           NNY    K+LY + ++I  + + V V  +      R     IS+Q ++P
Sbjct: 99  NNYNNYNKKLYYNINYIEQIPVPVPVPVYCGNFPPRPMGPWISIQEQIP 147


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 526 PIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTV 639
           P  +S  W +    W L  CKL+      S Y++ +T+
Sbjct: 88  PFELSVFWQQYPWQWGLGICKLRAYVSETSSYVSVLTI 125


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = +3

Query: 168 WKLTRDENNYGIPQKRLYGHSHFISDVVLLVTVITHFPVLGTRLCVCGISLQARLP 335
           +K   + NNY    K+LY + ++I  + + V V  +     +R     + +Q ++P
Sbjct: 96  YKYNYNNNNYNNNCKKLYYNINYIEQIPVPVPVPIYCGNFPSRPMGPWVPMQEQIP 151


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -3

Query: 471 SWMVYLHSARVFQSLIVLSREPDTI*RLSTEKATESTSLVW 349
           SW     +  +F  L++L+   +++  LS  +   ST+L W
Sbjct: 2   SWQRVFLAVGLFGVLLLLTNADNSVHILSKYQLITSTTLNW 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,291
Number of Sequences: 438
Number of extensions: 4985
Number of successful extensions: 18
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)