Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30013X
         (352 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)                   29   1.4  
SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17)                  27   4.3  
SB_32509| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_40175| Best HMM Match : Ins_beta (HMM E-Value=9.2)                  26   7.5  
SB_57606| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  
SB_23549| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  

>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
          Length = 1146

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 120 FSISNNIVNYFLLLDCFFVYLQIKNGTILCTG 215
           FS S ++ ++ LLL  F + L++ +  +LCTG
Sbjct: 713 FSCSGSLYSFVLLLFRFSLQLRVTSDQVLCTG 744


>SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17)
          Length = 1420

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 144 NYFLLLDCFFVYLQIKNGT 200
           NY   LDCF VY Q+  G+
Sbjct: 54  NYRKKLDCFLVYFQVNRGS 72


>SB_32509| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 254 PRGSREPQCRDKEPCT 207
           P   R P C+D++PCT
Sbjct: 64  PAKQRRPSCQDRQPCT 79


>SB_40175| Best HMM Match : Ins_beta (HMM E-Value=9.2)
          Length = 175

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -2

Query: 291 LPKPLKTRTRHSASWKPGTTMSRQRTLYIESCRFLFVN 178
           +P P K     S  W     +  + +L + +CR LF N
Sbjct: 113 IPLPRKISRHPSGVWNVDGELLEEPSLLVSNCRLLFPN 150


>SB_57606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +3

Query: 72  FLHLKYMKHNKYKLCLFSISNNIVNYFLLLDCF 170
           +L  K++K N+ ++C+F+   N ++Y    +C+
Sbjct: 229 YLFGKWLKTNQRRVCMFTDPENCLSYEKWEECY 261


>SB_23549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 291 LPKPLKTRTRHSASWKPGTTMSRQRTLYI 205
           LP  L++  RH  + +  T  +RQ TLYI
Sbjct: 62  LPDILRSLYRHHQTERTSTDFTRQSTLYI 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,852,879
Number of Sequences: 59808
Number of extensions: 195067
Number of successful extensions: 414
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)