Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30013X
         (352 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   4.2  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    20   9.8  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    20   9.8  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    20   9.8  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    20   9.8  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    20   9.8  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    20   9.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    20   9.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    20   9.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   9.8  

>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 260 CLVRVFNGFGSG 295
           CL++ FNG+  G
Sbjct: 65  CLIKKFNGYDDG 76


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +3

Query: 234 WFPASTRHC 260
           WFP   +HC
Sbjct: 117 WFPFDDQHC 125


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +3

Query: 234 WFPASTRHC 260
           WFP   +HC
Sbjct: 117 WFPFDDQHC 125


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +3

Query: 234 WFPASTRHC 260
           WFP   +HC
Sbjct: 117 WFPFDDQHC 125


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +3

Query: 234 WFPASTRHC 260
           WFP   +HC
Sbjct: 117 WFPFDDQHC 125


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +3

Query: 234 WFPASTRHC 260
           WFP   +HC
Sbjct: 117 WFPFDDQHC 125


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +3

Query: 234 WFPASTRHC 260
           WFP   +HC
Sbjct: 117 WFPFDDQHC 125


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +3

Query: 234 WFPASTRHC 260
           WFP   +HC
Sbjct: 185 WFPFDDQHC 193


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +3

Query: 234 WFPASTRHC 260
           WFP   +HC
Sbjct: 185 WFPFDDQHC 193


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 240 GTTMSRQRTLYIESCRFLFVNRQKNNRG 157
           G  + + + +Y+E+ R    NR++ N G
Sbjct: 494 GWKVEKIQEIYLEALRAYVDNRRRPNPG 521


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,185
Number of Sequences: 438
Number of extensions: 2271
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)