Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30011
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0058 - 4695400-4695648,4695846-4696112,4706026-4706430           28   6.9  
09_06_0017 - 20248672-20248783,20248982-20249229,20249314-202494...    28   6.9  

>10_02_0058 - 4695400-4695648,4695846-4696112,4706026-4706430
          Length = 306

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 103 FPEHTAHLIVSGHRCSWTSAIP 38
           FPE T HL+ S     W S +P
Sbjct: 116 FPERTMHLVCSSFSLHWLSKVP 137


>09_06_0017 -
           20248672-20248783,20248982-20249229,20249314-20249480,
           20249916-20250079,20251275-20251555
          Length = 323

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -1

Query: 467 YRLVK*TFAFILI*L*FNYSLPCIGLKGWNGREGCH 360
           Y+ V    AF+L+ + F  SL  +  KG NG +GCH
Sbjct: 272 YQYVLWVVAFVLLLVGFVVSLVML-FKGKNGNDGCH 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,883,684
Number of Sequences: 37544
Number of extensions: 262061
Number of successful extensions: 505
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)