Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30011
         (620 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36470.1 68417.m05179 S-adenosyl-L-methionine:carboxyl methyl...    30   1.4  
At2g26430.1 68415.m03171 ania-6a type cyclin (RCY1) nearly ident...    28   4.3  
At4g25090.1 68417.m03604 respiratory burst oxidase, putative / N...    27   7.6  

>At4g36470.1 68417.m05179 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to SAM:jasmonic
           acid carboxyl methyltransferase (JMT)[GI:13676829] and
           to SAM:salicylic acid carboxyl methyltransferase
           (SAMT)[GI:6002712][Clarkia breweri]
          Length = 371

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 103 FPEHTAHLIVSGHRCSWTSAIPGA 32
           FPE+T H + + H   W S +P A
Sbjct: 147 FPENTIHFVYASHSLHWLSKVPTA 170


>At2g26430.1 68415.m03171 ania-6a type cyclin (RCY1) nearly
           identical to ania-6a type cyclin [Arabidopsis thaliana]
           GI:13924511
          Length = 416

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +2

Query: 404 ASCN*ITIKLE*TRMFILQACILLSRLESRQRNFQLS-LNIYKLRITATGLS-SAEQFHQ 577
           ASC  +  KLE       Q  I+  R+E R+ N  L  L++Y  + +   +  S  + H 
Sbjct: 82  ASCVWLASKLEENPKKARQVIIVFHRMECRRENLPLEHLDMYAKKFSELKVELSRTERHI 141

Query: 578 LGGRSFFCH 604
           L    F CH
Sbjct: 142 LKEMGFVCH 150


>At4g25090.1 68417.m03604 respiratory burst oxidase, putative /
           NADPH oxidase, putative similar to respiratory burst
           oxidase protein A from Arabidopsis thaliana, gb:AF055353
           [gi:3242781], protein D [gi:3242789]; contains Pfam
           profile PF01794 Ferric reductase like transmembrane
           component
          Length = 849

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 514 FEYLQAPYNSNRTIVCRAISPARWKIFLLSSTPK 615
           F+Y+   Y     + C A+SP  W  F ++STP+
Sbjct: 569 FKYMSGQY---MFVNCPAVSPFEWHPFSITSTPQ 599


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,369,821
Number of Sequences: 28952
Number of extensions: 228310
Number of successful extensions: 490
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)