Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30010X
(566 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0... 44 1e-05
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 3.4
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 26 4.4
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 4.4
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac... 25 5.9
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ... 25 5.9
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy... 25 5.9
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa... 25 7.7
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 25 7.7
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 7.7
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 7.7
>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
Q0130|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 74
Score = 44.4 bits (100), Expect = 1e-05
Identities = 21/31 (67%), Positives = 25/31 (80%)
Frame = +3
Query: 312 FGSLIIGYSRNPSLKQQLFSYAILGFALSEA 404
F +LI G SRNPS++ LFS AILGFAL+EA
Sbjct: 28 FSNLISGTSRNPSVRPHLFSMAILGFALTEA 58
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 3.4
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Frame = +1
Query: 286 VPELVLEQSSAPSSSAIPGT------PPSNSSCSHTP 378
VP ++ + P SS P T PPS SS +H P
Sbjct: 1494 VPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVP 1530
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 4.4
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = +3
Query: 60 NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTC 173
+ VC R C ++ + L + +C + DGTC
Sbjct: 417 SGVCTSASRQCKKLTNFSSLSCHSDSCKVSCQNEDGTC 454
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 310 SSAPSSSAIPGTPPSNSSCSHTPFWVSP 393
+S P+SSA P P+ ++ HTP SP
Sbjct: 684 NSYPASSAEPIRRPATTTVGHTPNLYSP 711
>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 5.9
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +1
Query: 295 LVLEQSSAPSSSAIPGTPPSNSS 363
LVL S++PSS+++ G+ S+SS
Sbjct: 483 LVLTASASPSSTSVDGSSSSDSS 505
>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 25.4 bits (53), Expect = 5.9
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 134 HLQQYPPIHRWYLLSLHSSLQC 199
HL Y P WYL SLH C
Sbjct: 63 HLTIYEPQLTWYLSSLHRITGC 84
>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 505
Score = 25.4 bits (53), Expect = 5.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 551 SKHSIPWLSTPDSIPETLICRMA 483
+KH IPWLS + ++C M+
Sbjct: 354 NKHGIPWLSVLATSATAILCLMS 376
>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
Vps32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 148 PTHTQMVPAVPTQLSAVRS 204
P HT VPAVP+Q+ + S
Sbjct: 182 PVHTPAVPAVPSQVKDLPS 200
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -1
Query: 302 NTSSGTSYSHCRCTSTMNLAAESMSLVTDVVWKDRTAESCVGTAG 168
NTSSGT+ + T+T ++A + +D K+R +C+ G
Sbjct: 124 NTSSGTTLNSTSKTTTSSVAVDDQKSKSDSK-KERRDWTCLDLGG 167
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 486 HPTYEGFRYTIWSGQPWNRMF*NL 557
HP FRY IWS P N F +L
Sbjct: 827 HPRVPNFRYFIWS-VPMNNWFQSL 849
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = +1
Query: 313 SAPSSS---AIPGTPPSNSSCSHTPFW 384
SAPSSS A + P+NSS ++TP W
Sbjct: 629 SAPSSSINLANITSRPTNSSAANTPSW 655
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,247,178
Number of Sequences: 5004
Number of extensions: 41517
Number of successful extensions: 165
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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