Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30010X
         (566 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   0.93 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   1.6  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   1.6  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   1.6  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   4.9  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.9  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.9  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.9  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.9  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.9  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.6  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   8.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   8.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   8.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 76  WRQTAFCFYKVRRATTKN 23
           W Q  FC+++   AT KN
Sbjct: 533 WFQNTFCYFRRNAATWKN 550


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 283 LVPELVLEQSSAPSSSAIPGTPPSNSSCSHTP 378
           ++ E V+E +S+PS +    + PS+S+ S  P
Sbjct: 499 VIHEPVVETNSSPSPNPRIASAPSSSTSSSPP 530


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 410 SVLSYDGVPAALRFVS 457
           +V+ YDGVP++L  +S
Sbjct: 83  AVIRYDGVPSSLNVIS 98


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 410 SVLSYDGVPAALRFVS 457
           ++L YDGVP+ L  +S
Sbjct: 80  TILRYDGVPSTLNVIS 95


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 410 SVLSYDGVPAALRFVS 457
           +V+ Y+GVP++L  VS
Sbjct: 84  AVIRYNGVPSSLNVVS 99


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 23  VLCCRAPHLI 52
           V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 23  VLCCRAPHLI 52
           V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 23  VLCCRAPHLI 52
           V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 23  VLCCRAPHLI 52
           V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 23  VLCCRAPHLI 52
           V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 23  VLCCRAPHLI 52
           V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 23  VLCCRAPHLI 52
           V+ CRAPH+I
Sbjct: 518 VILCRAPHII 527


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 23  VLCCRAPHLI 52
           V+ CRAPH+I
Sbjct: 518 VILCRAPHII 527


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/11 (63%), Positives = 9/11 (81%), Gaps = 1/11 (9%)
 Frame = +2

Query: 140 QQYP-PIHRWY 169
           Q +P P+HRWY
Sbjct: 237 QGFPVPVHRWY 247


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 478 TTAILHMRVSGILSGVDSHGI 540
           T AIL    SG +  +D+H I
Sbjct: 780 TLAILDFHESGFMESLDNHWI 800


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 170 LLSLHSSLQCGPSRPHRSLRTLTLLPN 250
           +L ++  L C   +  +S+R +T LP+
Sbjct: 208 MLGIYCRLYCYAQKHVKSIRAVTKLPD 234


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 410 SVLSYDGVPAALRFVS 457
           ++L Y+GVP++L  +S
Sbjct: 79  TMLRYNGVPSSLNVIS 94


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 322 SSSAIPGTPPSNSSCS 369
           S++  P +P SNS CS
Sbjct: 318 SNNGSPRSPESNSRCS 333


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 410 SVLSYDGVPAALRFVS 457
           ++L Y+GVP++L  +S
Sbjct: 79  TMLRYNGVPSSLNVIS 94


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 410 SVLSYDGVPAALRFVS 457
           ++L Y+GVP++L  +S
Sbjct: 79  TMLRYNGVPSSLNVIS 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,274
Number of Sequences: 438
Number of extensions: 3051
Number of successful extensions: 20
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)