Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30009
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    54   2e-08
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    31   0.15 
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac...    27   2.4  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   3.2  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   4.2  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   7.4  
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy...    25   9.8  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 28/60 (46%), Positives = 34/60 (56%)
 Frame = +1

Query: 325 RIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXXTGPFAFNSCPLRRIPQRYVIGTS 504
           ++R +L  GTVCILLAGR  GKR              TGP+  N  P+RR+  RYVI TS
Sbjct: 47  KLRASLAPGTVCILLAGRFRGKR-VVVLSQLEDTLVVTGPYKVNGVPIRRVNHRYVIATS 105


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 407 PTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARIFS 273
           P S+ + P  LP+RR +T  I  L  ++  CLL    P  +R FS
Sbjct: 21  PESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAFS 65


>SPBC1734.09 |||NST UDP-N-acetylglucosamine
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 535 GSLKLPSEIWWRCRSHSAEEYGVAGTN 455
           G L LPS +W+ C +  A+ + V G N
Sbjct: 222 GFLNLPSGVWYLCFNTLAQYFCVRGVN 248


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +1

Query: 490  VIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLP 624
            V+ TST   S+T+   NTS  ITS  + ++S   +++  V TS P
Sbjct: 2357 VVNTSTPITSSTA--LNTSTSITSSSVLNSSTPITSSTVVNTSTP 2399



 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +1

Query: 490  VIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLP 624
            V+ TST   S+T+   NTS  ITS  + ++S   +++  V TS P
Sbjct: 1121 VVNTSTPITSSTA--LNTSTPITSSSVLNSSTPITSSTVVNTSTP 1163



 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +1

Query: 490  VIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLP 624
            V+ TST   S+T+   NTS  ITS  + ++S   +++  V TS P
Sbjct: 2765 VVNTSTPITSSTA--LNTSTPITSSSVLNSSTPITSSTVVNTSTP 2807



 Score = 25.0 bits (52), Expect = 9.8
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +1

Query: 490  VIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLP 624
            V+ +ST   S+T+   NTS  ITS  + ++S   +++  + TS P
Sbjct: 3293 VVNSSTPITSSTT--LNTSTPITSSSVLNSSTAITSSTALNTSTP 3335


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 20  PHLQVVTKKKSTKKPRNYDLGNGVMRFSXSKMF 118
           P   V     +TK PRN+ L N ++RFS   +F
Sbjct: 279 PDCNVAFTFSNTKGPRNFVLENHLVRFSSLYIF 311


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 441 TFCFQFVPATPYSSALCDRHLHQISLGNFKLPKH 542
           TF     P TP+ + L +R L +  L     PKH
Sbjct: 460 TFVADIPPKTPWGTTLINRKLREEVLREVFAPKH 493


>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 50  STKKPRNYDLGNGVMRFSXSKMFHKKAKY 136
           S K+P+N D+ + +++    K   KK+KY
Sbjct: 249 SKKRPQNSDITSSLLKKPNRKQATKKSKY 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,226
Number of Sequences: 5004
Number of extensions: 48077
Number of successful extensions: 183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)