Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30009
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    61   9e-10
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379...    59   3e-09
08_01_0399 + 3524723-3525272,3525468-3525544,3526816-3526861,352...    31   1.1  
10_07_0077 + 12645091-12646750,12647612-12648273                       29   3.3  
02_01_0076 + 540182-540583,541266-541475,541557-542018,542112-54...    28   7.7  

>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 36/85 (42%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
 Frame = +1

Query: 259 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXX 435
           FYP  + K RA S  +    +  ++R  +  GTV ILLAGR+ GKR              
Sbjct: 50  FYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLI 106

Query: 436 TGPFAFNSCPLRRIPQRYVIGTSTK 510
           TGPF  N  P+RR+ Q YVI TSTK
Sbjct: 107 TGPFKINGVPIRRVNQAYVIATSTK 131


>04_04_0211 -
           23636377-23636532,23636624-23636805,23637853-23637959,
           23637997-23638280
          Length = 242

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 35/84 (41%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
 Frame = +1

Query: 265 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXXT 438
           PT+ +  +SS    FS  + +  +R ++  GTV ILLAGR  GKR              T
Sbjct: 71  PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVT 130

Query: 439 GPFAFNSCPLRRIPQRYVIGTSTK 510
           GPF  N  P+RR+ Q YVI TSTK
Sbjct: 131 GPFKINGVPIRRVNQPYVIATSTK 154


>08_01_0399 +
           3524723-3525272,3525468-3525544,3526816-3526861,
           3527121-3527235,3528252-3528306,3528432-3528557
          Length = 322

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 206 GGEKNGGTRTVPLKRRSPSTP-LRRKSVLHLVAVHSASMYAGSD 334
           GG   GG R V   +R+P  P +R  S LH   VH+  +  G D
Sbjct: 140 GGCGGGGARGVLPAKRAPRAPRMRWTSTLHARFVHAVELLGGHD 183


>10_07_0077 + 12645091-12646750,12647612-12648273
          Length = 773

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +2

Query: 20  PHLQVVTKKKSTKKPRNYDLGNGVMRFSXSKMFHKKAKY 136
           PH+QV+TK  +   PR +  G+ +   S S +F KK+K+
Sbjct: 649 PHIQVITKMSNITCPRKFRPGD-LNYPSFSVVFKKKSKH 686


>02_01_0076 +
           540182-540583,541266-541475,541557-542018,542112-542222,
           542309-542488,543083-543367,544581-544701,544802-544923
          Length = 630

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +1

Query: 448 AFNSCPLRRIPQRYVIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTS 618
           A  SC +      Y+ GT   FH   SNC   S +     I S S V ++A+R + S
Sbjct: 225 AIFSCVIEDARNNYLGGTGGLFHKWKSNCSLDSSVCID--IISESEVVNSARRRLDS 279


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,793,188
Number of Sequences: 37544
Number of extensions: 355433
Number of successful extensions: 764
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)