Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30009
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               37   0.013
SB_27497| Best HMM Match : Death (HMM E-Value=0.028)                   33   0.28 
SB_58298| Best HMM Match : Vicilin_N (HMM E-Value=0.48)                29   2.6  
SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 16/22 (72%), Positives = 16/22 (72%)
 Frame = +1

Query: 442 PFAFNSCPLRRIPQRYVIGTST 507
           PF  N  PLRRIPQ YVI TST
Sbjct: 2   PFKINGVPLRRIPQSYVIATST 23


>SB_27497| Best HMM Match : Death (HMM E-Value=0.028)
          Length = 892

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +2

Query: 194 VKQIGGEKNGGTRTVPLKRRSPSTPLRRKSVLHLVAVHSASMYAGSDP 337
           VK++ G     TR VP++ ++   P +   V  LV  HS   Y GSDP
Sbjct: 257 VKEMLGLSPFATRDVPMRNKAIKLPKKAPPVF-LVCTHSDEPYEGSDP 303


>SB_58298| Best HMM Match : Vicilin_N (HMM E-Value=0.48)
          Length = 204

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +1

Query: 436 TGPFAFNSCPLRRIPQRYVIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMT 615
           T   A N+C  RR  ++      T    AT+NC+  +  +   +  +A    +N +R   
Sbjct: 92  TAEGATNNC--RRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQRTTAEGATNNCRRRNE 149

Query: 616 SLPQKKRNT 642
            LP+ +R T
Sbjct: 150 QLPKAQRTT 158



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +1

Query: 436 TGPFAFNSCPLRRIPQRYVIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMT 615
           T   A N+C  RR  ++      T    AT+NC+  +  +   +  +A    +N +R   
Sbjct: 114 TAEGATNNC--RRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQRTTAEGTTNNCRRHNE 171

Query: 616 SLPQKKRNT 642
            LP+ +R T
Sbjct: 172 QLPKAQRTT 180



 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +1

Query: 454 NSCPLRRIPQRYVIGTSTKFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKK 633
           N+C  RR  ++      T    AT+NC+  +  +   +  +A    +N +R    LP+ +
Sbjct: 76  NNC--RRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQ 133

Query: 634 RNT 642
           R T
Sbjct: 134 RTT 136


>SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +3

Query: 333 TQPEDRNCLHSPRW*TCRQEGCTCWN-SAXRSAFSYWTFCFQFVPATPYS 479
           TQ   R   HSPR   CR   CT +N    +   S+ T C +  P   +S
Sbjct: 84  TQEAYRKNSHSPRKRQCRNRLCTSYNWIRNKETSSFVTLCHREKPVGHFS 133


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 657 LLKMERISLFLWQRCHHPL 601
           L KM++++LFLW+R  H L
Sbjct: 703 LCKMQKMALFLWERGEHAL 721


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,834,070
Number of Sequences: 59808
Number of extensions: 392631
Number of successful extensions: 1056
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)