Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30009
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    50   2e-06
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    31   0.73 
Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z81475-3|CAB03909.1|  303|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 29/62 (46%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 328 IRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXX-TGPFAFNSCPLRRIPQRYVIGTS 504
           +R  L  GTV I+LAGRH GKR               TGP   N  PLRRI Q +VI TS
Sbjct: 67  LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126

Query: 505 TK 510
            K
Sbjct: 127 LK 128



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 32  VVTKKKSTKKPRNYDLGNGVMRFSXSKMFHKKAKYK 139
           +V K+      RN+DL  GV+RFS S++  KK + K
Sbjct: 1   MVGKRNLPVISRNFDLSPGVLRFSASRLRLKKGEKK 36



 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 507 QISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPS 650
           ++++   K+P+H ND+YF               G +IFA+ K +Y  S
Sbjct: 128 KVNVSGVKIPEHINDEYF------KRKSTAQKTGKNIFASGKTEYTVS 169


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 259 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 393
           FYPT+   +A S G P +       PN ++  V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical protein
            F23D12.2 protein.
          Length = 1322

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 218  NGGTRTVPLKRRSPSTPLRRKSVLHLVAVHSASMYAGSDPT*R*ELFA 361
            NGGT+ + L +  P TP+   SV+  V V S  +     P    EL A
Sbjct: 975  NGGTKGMSLSQTLPQTPIALSSVVESVEVISCKVSTEISPAKADELVA 1022


>U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical
           protein K07E3.1 protein.
          Length = 1061

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 479 GIRRSGHELKAKGPVTKSRPXGRIPTSTTL 390
           G+  SG+ + +  P+T+    G +PTS+T+
Sbjct: 130 GVELSGNPIMSMAPITELATNGGLPTSSTI 159


>Z81475-3|CAB03909.1|  303|Caenorhabditis elegans Hypothetical
           protein C24H11.3 protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 235 STPQT*ESFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTV 357
           STP+  E FYP  E I   + GR    H+  I   L  G++
Sbjct: 15  STPEIWEEFYPKTEMIVTRNRGRVIFPHLDYIIKGLDPGSL 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,585,825
Number of Sequences: 27780
Number of extensions: 287898
Number of successful extensions: 648
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)