Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30009
         (667 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    63   2e-10
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    63   2e-10
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    60   1e-09
At5g08320.1 68418.m00979 expressed protein predicted proteins, H...    28   4.9  
At3g62200.1 68416.m06988 expressed protein contains Pfam profile...    28   6.4  
At1g34550.1 68414.m04294 expressed protein contains Pfam profile...    27   8.5  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 35/84 (41%), Positives = 46/84 (54%)
 Frame = +1

Query: 259 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXXT 438
           FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKR              T
Sbjct: 64  FYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVT 121

Query: 439 GPFAFNSCPLRRIPQRYVIGTSTK 510
           GPF  N  PLRR+ Q YVIGTSTK
Sbjct: 122 GPFKINGVPLRRVNQAYVIGTSTK 145


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 35/84 (41%), Positives = 46/84 (54%)
 Frame = +1

Query: 259 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXXT 438
           FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKR              T
Sbjct: 64  FYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVT 121

Query: 439 GPFAFNSCPLRRIPQRYVIGTSTK 510
           GPF  N  PLRR+ Q YVIGTSTK
Sbjct: 122 GPFKINGVPLRRVNQAYVIGTSTK 145


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 35/93 (37%), Positives = 48/93 (51%)
 Frame = +1

Query: 259 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRXXXXXXXXXXXXXXT 438
           FYP ++ ++     R   K  + ++ ++  GTV I+LAGR  GKR              T
Sbjct: 64  FYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVT 121

Query: 439 GPFAFNSCPLRRIPQRYVIGTSTKFHSATSNCQ 537
           GPF  N  PLRR+ Q YVIGTSTK   +  N +
Sbjct: 122 GPFKINGVPLRRVNQAYVIGTSTKIDISGVNTE 154


>At5g08320.1 68418.m00979 expressed protein predicted proteins, Homo
           sapiens and Caenorhabditis elegans
          Length = 150

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 501 GADHIALRNTA*RARIESKRSSN*KQTXGQNSNKYNPLACMSTSEE 364
           G D +  +NT      + +R S  ++T  ++S K NP+ C + S E
Sbjct: 85  GTDTVLQQNTMPLKVGKRRRDSEMQETGSEDSEKVNPVFCSACSTE 130


>At3g62200.1 68416.m06988 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 673

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 220 WGNQNSTPQT*ESFYPTQEKIRASSGGRPFSKHVRRIRP 336
           W N NS P   +++YP   +  A++   P+    R  RP
Sbjct: 319 WNNGNSIPNHAQNYYPNAARPGAATMRPPYGNVFRPYRP 357


>At1g34550.1 68414.m04294 expressed protein contains Pfam profile
           PF04765: Protein of unknown function (DUF616);
           expression supported by MPSS
          Length = 812

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 220 WGNQ--NSTPQT*ESFYPTQEKIRASSGGRPFSKHVRRIRPNLK 345
           W N+    TP+   SF  T +K+R  +  +PF+ H+ +IR   K
Sbjct: 684 WFNEVERFTPRDQLSFAYTYQKLRRMNPDKPFNLHMFKIRREAK 727


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,808,287
Number of Sequences: 28952
Number of extensions: 269519
Number of successful extensions: 639
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)