Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30007
         (635 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    24   0.92 
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    24   0.92 
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    24   0.92 
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   4.9  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   6.5  

>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = -2

Query: 328 SVRRRVFILTLDGENIDIINFLQGSDD*ALIPLSVSYPKLNPSGFTSVSERRMTASAS 155
           ++ RRV +  L      +    +   D  L+ + ++ PK++  G+T V+   +TAS +
Sbjct: 309 NIARRVQVTLLQVNLSQVDPATRKEIDIFLVAIQMNPPKVSLKGYTVVNRELVTASVA 366


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = -2

Query: 328 SVRRRVFILTLDGENIDIINFLQGSDD*ALIPLSVSYPKLNPSGFTSVSERRMTASAS 155
           ++ RRV +  L      +    +   D  L+ + ++ PK++  G+T V+   +TAS +
Sbjct: 309 NIARRVQVTLLQVNLSQVDPATRKEIDIFLVAIQMNPPKVSLKGYTVVNRELVTASVA 366


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = -2

Query: 328 SVRRRVFILTLDGENIDIINFLQGSDD*ALIPLSVSYPKLNPSGFTSVSERRMTASAS 155
           ++ RRV +  L      +    +   D  L+ + ++ PK++  G+T V+   +TAS +
Sbjct: 309 NIARRVQVTLLQVNLSQVDPATRKEIDIFLVAIQMNPPKVSLKGYTVVNRELVTASVA 366


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin
          deacetylase 1 protein.
          Length = 534

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 18 VLALCVCAVSAQE 56
          +LA+C C V AQ+
Sbjct: 10 ILAICACTVFAQQ 22


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 503 TTPPPKKSGLYFEHHTLSISITSD 574
           TTP P  S L ++H   S + T++
Sbjct: 266 TTPSPSASPLAYQHEYNSFNWTAN 289


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,939
Number of Sequences: 336
Number of extensions: 2411
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)