Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30007
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    28   1.3  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    28   1.3  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    27   2.3  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    27   3.0  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   5.2  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    25   6.9  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   6.9  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    25   6.9  
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    25   6.9  

>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 463 RNREKVINPEDSEHNAPAKEKWTLFRAPYVININN 567
           +N +   +P  ++H AP+ E+W+   A Y  N++N
Sbjct: 251 QNPDGTFSPGSTDHPAPSPEEWSTITAKY-SNLHN 284


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 578 DYPMLLILITYGARNKVHFSLAGA 507
           DYP+L + +TY   ++VH S+  A
Sbjct: 92  DYPLLFLNVTYEEADRVHISIKDA 115


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 578 DYPMLLILITYGARNKVHFSLA 513
           DYP LL+ ++Y    +VH S++
Sbjct: 114 DYPYLLLNVSYDTEERVHISIS 135


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 434 DYILAHPPKTETVKKL*IQKIQSTTPPPKKSGLYFEHHTLSISITSDS 577
           +YI+ +   TE++  L I+ IQST PP   +    +     I +TSD+
Sbjct: 71  EYIVQNGLSTESI--LDIEYIQSTLPPAYLASFSHDDWISGIQLTSDT 116


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 308  EYSAPDGTPVKFTYTADENGYQPQ-SELLPVAPPMP 412
            +Y   +   V+ T T DE+G+Q Q +    VA P+P
Sbjct: 955  DYEGTEDNIVRQTTTVDEDGHQEQTTSTTKVAHPIP 990



 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 317  APDGTPVKFTYTADENGYQPQSELLPVAPPMPEAIRRAIDYILAHPPK 460
            A +G+ V  T   D N     S +  V+   P  + R+ DY+++H P+
Sbjct: 1124 ALEGSAVSKTDDVD-NVVSGHSNVNGVSKSRPNIVERSEDYVISHLPE 1170


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 150 GSEADAVILRSDTEVNPDGFSFGYETDNGIS 242
           G +A  V   + T    DGF +GY T+ GIS
Sbjct: 365 GIDASGVYWNASTRF-ADGFRYGYGTEVGIS 394


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1157

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 340  LHRGSVRRRVFILTLDGENIDII 272
            L  G V+ + F+L +D E IDI+
Sbjct: 970  LRSGLVKHKAFVLAVDQEYIDIV 992


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 633 FFFFLWHIFKFYLHYKFI*LSDVIDIDNV-WCSK*SPLFFGGGVVL*IFWIYNFFTVSVL 457
           F+FFL   +  Y     + ++ +  I +V WC    P   GG +   +FW+++    S++
Sbjct: 136 FWFFLIFYYGIYNAVGLLWITKLFHIYSVNWC----PSKLGGTITYILFWMFSLLVGSLV 191


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +3

Query: 273 IISMFSPSKVNMNTLRLTEPL*SSRIQLTRTDTNHRVSYFQLLLQCLKPS 422
           +++ F+  +  ++ LR    L   RIQ  R + + R   F+  ++CL+ S
Sbjct: 169 LVTNFNDQQDEVDELRERITLKEERIQQMRNEASQRRFEFKTTIECLEES 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,395
Number of Sequences: 5004
Number of extensions: 42542
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)