Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30007
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0617 + 30383334-30383579,30383592-30383681,30383772-303839...    30   1.8  
09_04_0541 + 18437075-18440062                                         28   5.4  
02_05_0336 + 28033315-28033365,28033580-28033585,28033798-280338...    28   7.1  

>02_05_0617 +
           30383334-30383579,30383592-30383681,30383772-30383901,
           30384578-30384591
          Length = 159

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/69 (23%), Positives = 31/69 (44%)
 Frame = +2

Query: 368 YQPQSELLPVAPPMPEAIRRAIDYILAHPPKTETVKKL*IQKIQSTTPPPKKSGLYFEHH 547
           Y+P+    P APP    +  A  ++L  PP   + ++L    + +  PP ++S     H 
Sbjct: 29  YRPRRPAAPTAPPGSRGL--AAQWLLPPPPPRRSHRRLIAPAVPAEFPPSRRSRHLVVHP 86

Query: 548 TLSISITSD 574
            + +   +D
Sbjct: 87  FMDVFHVTD 95


>09_04_0541 + 18437075-18440062
          Length = 995

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +1

Query: 460 DRNREKVINPEDSEHNAPAKEKWTLFR-APYVININNI 570
           ++ R ++ + E+ EH+A  + K  LFR  PY++ I+NI
Sbjct: 521 EKERGRIRSFEEQEHDAFQRVKRELFRDVPYLLIIDNI 558


>02_05_0336 +
           28033315-28033365,28033580-28033585,28033798-28033884,
           28034741-28034830,28035736-28037778,28037916-28038062,
           28038148-28038560,28038656-28038755
          Length = 978

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +3

Query: 339 SSRIQLTRTDTNHRVSYFQLLLQCLKPSVALLTTFSLTH 455
           +S  Q ++++ +H  S  Q+  +C +PS+A +  +S+TH
Sbjct: 852 TSEFQQSKSNRDHHNSR-QVDRECTQPSIASMANYSVTH 889


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,854,851
Number of Sequences: 37544
Number of extensions: 276387
Number of successful extensions: 700
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)